BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZD05RM1.SCF screened BAC_end
(955 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1100 1703 0.0
>3x_Contig1100
Length = 4703
Score = 1703 bits (859), Expect = 0.0
Identities = 904/913 (99%), Gaps = 5/913 (0%)
Strand = Plus / Plus
Query: 42 gcttagtctccaa-gtttgtttcatttctcgaggatcaacataatcatactcaactccgt 100
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 2973 gcttagtctccaaagtttgtttcaattctcgaggatcaacataatcatactcaactccgt 3032
Query: 101 aagcaggctgcaatatctttacattttctagcccaggaatcattctcatcataatttcct 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3033 aagcaggctgcaatatctttacattttctagcccaggaatcattctcatcataatttcct 3092
Query: 161 gaacatcctcaggcattgaattcgatattccatttggatatatgacgtctgtatttaacc 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3093 gaacatcctcaggcattgaattcgatattccatttggatatatgacgtctgtatttaacc 3152
Query: 221 cttcaggctccaaccatattctgtgcgaatctttgtcactaaatctgataattttagctt 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3153 cttcaggctccaaccatattctgtgcgaatctttgtcactaaatctgataattttagctt 3212
Query: 281 ctaaggacggacaatatcgaggacctttgacagtttctctaatatgaatagattgatgca 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3213 ctaaggacggacaatatcgaggacctttgacagtttctctaatatgaatagattgatgca 3272
Query: 341 aattaagctttaaataatcatgcaattcggaagtagtgcgtgtaccataacataaaattt 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3273 aattaagctttaaataatcatgcaattcggaagtagtgcgtgtaccataacataaaattt 3332
Query: 401 ggtctttgatactcacttcattattcatgtatgacattggatacggggggtcatcaccgt 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3333 ggtctttgatactcacttcattattcatgtatgacattggatacggggggtcatcaccgt 3392
Query: 461 attgtttttcaagattcgtaaaatcaatggttctaccatcaagtcttgccggagtaccag 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3393 attgtttttcaagattcgtaaaatcaatggttctaccatcaagtcttgccggagtaccag 3452
Query: 521 tctttaatctacccaacttaaatccagcagctttcaacgtatgacttattccataggtag 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3453 tctttaatctacccaacttaaatccagcagctttcaacgtatgacttattccataggtag 3512
Query: 581 gtgcttcaccaattcttccggcaggaatggttttcaaaccaatatgaatttctgcactta 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3513 gtgcttcaccaattcttccggcaggaatggttttcaaaccaatatgaatttctgcactta 3572
Query: 641 gaaatgtaccagttgaaatgacaactttggaacatttgataacctcatcattatctagaa 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3573 gaaatgtaccagttgaaatgacaactttggaacatttgataacctcatcattatctagaa 3632
Query: 701 ccacccctcgcacatcgccaaaatttctattatttacatcattggcaaaagacactttca 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3633 ccacccctcgcacatcgccaaaatttctattatttacatcattggcaaaagacactttca 3692
Query: 761 gtgtgtggtctattataacgtccttcactttgccggagaatagagttaggttttggataa 820
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 3693 gtgtgtggtctattataacgtccttcactttgccggagaatagagttagg-tttggataa 3751
Query: 821 ttttgtagtgcgttttgcatttccttc-aatataactctcggtcaatctgagcacgaaga 879
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 3752 ttttgtagtgcgttttgcatttccttcaaatataactctcggtcaatctgagcacgagga 3811
Query: 880 cccc-aacagcagcacccctactttgatttaacatc-tgaactgtattnctgctttatnc 937
|||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
Sbjct: 3812 ccccaaacagcagcacccctactttgatttaacatcttgaactgtattcctgctttatcc 3871
Query: 938 gtgaccttagcag 950
|||||||||||||
Sbjct: 3872 gtgaccttagcag 3884
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6996
Number of Sequences: 1807
Number of extensions: 6996
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 955
length of database: 10,358,551
effective HSP length: 16
effective length of query: 939
effective length of database: 10,329,639
effective search space: 9699531021
effective search space used: 9699531021
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)