BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZD06RM1.SCF screened BAC_end
(991 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1303 1491 0.0
>3x_Contig1303
Length = 8112
Score = 1491 bits (752), Expect = 0.0
Identities = 858/884 (97%), Gaps = 7/884 (0%)
Strand = Plus / Plus
Query: 45 cttaaaacctgtgtttggaagtattctcttgcacacttattcttttcaacaagaaacact 104
||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||
Sbjct: 1637 cttaaaacctgtgtttggaagtatt-tcttgcac-ctt-ttcttttcaacaagaaacact 1693
Query: 105 cactcactataggaaaattcaatagctcaaacaaagaacagccctatatcactactcttt 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1694 cactcactataggaaaattcaatagctcaaacaaagaacagccctatatcactactcttt 1753
Query: 165 gttgatggctaaaagcttgttaacaaagtagttagctataaggatgtttccttctctttt 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1754 gttgatggctaaaagcttgttaacaaagtagttagctataaggatgtttccttctctctt 1813
Query: 225 tgttttctgttgtaatcatcagtccttttacaaaaataatggaaacttcaacaaaatttc 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1814 tgttttctgttgtaatcatcagtccttttacaaaaataatggaaacttcaacaaaatttc 1873
Query: 285 aacttctcttcaatttcttacttttttttgcagaatgtgacctggaagacaaacagatat 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1874 aacttctcttcaatttcttacttttttttgcagaatgtgacctggaagacaaacagatat 1933
Query: 345 atgtgagagcattcttatatctatatagacatgtctgtaaaaattgagtcttccaaaagt 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1934 atgtgagagcattcttatatctatatagacatgtctgtaaaaattgagtcttccaaaagt 1993
Query: 405 gtttcacgactgggtatgatagtgggacccgaatcaggttaggaggggctgtgtcatcta 464
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1994 gtt-cacgactgggtatgatagtgggacccgaatcaggttaggaggggctgtgtcatcta 2052
Query: 465 tttttacatactatatgtatattatctatcatttacttatcgagccaggaatcttcctgg 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2053 tttttacatactatatgtatattatctatcatttacttatcgagccaggaatcttcctgg 2112
Query: 525 ttcaacgaaaatctagagacgatcttttcattgatattagggaagattactgagatatcg 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2113 ttcaacgaaaatctagagacgatcttttcattgatattagggaagattactgagatatcg 2172
Query: 585 ttagtcttcatcgtaacgcacacttgcaggcttggaaacacatttcccttccacaattgt 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2173 ttagtcttcatcgtaacgcacacttgcaggcttggaaacacatttcccttccacaattgt 2232
Query: 645 tgaattgaaagtgtgacaaggatattttcaagtgattctgcggcgtaattgtctttatat 704
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 2233 tgaattgaaagtgtgacaaggatattttcaagtgattctgcggtgtaattgtctttatat 2292
Query: 705 atcgatggcattttaggttgatataaaccgatggattgtgctagaattggtcttatcaca 764
||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 2293 atcgatggcatttcaggtggatataaaccgatggattttgctagaattggtcttatcaca 2352
Query: 765 gattatggtagtttatttgaattgcgcggtatacagtagtataggaaaatagatcgcaaa 824
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2353 gagtatggtagtttatttgaattgcgcggtatacagtagtataggaaaatagatcgcaaa 2412
Query: 825 aaggattctgaacgttataatgggtagctttttccaatgaaccaatcaccattttagatt 884
| ||| |||||||||||||||||||||| ||||||||| | |||||| || |||||| |
Sbjct: 2413 aggga-tctgaacgttataatgggtagc-ttttccaatagaacaatcaacaatttaga-t 2469
Query: 885 gatttcagcccgcattcgttcttcttaagccagaagttaactct 928
|||||||||| ||||||||| | |||||||||||| |||||
Sbjct: 2470 gatttcagccacgattcgttctcgtaaagccagaagtttactct 2513
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8819
Number of Sequences: 1807
Number of extensions: 8819
Number of successful extensions: 79
Number of sequences better than 1.0e-20: 1
length of query: 991
length of database: 10,358,551
effective HSP length: 16
effective length of query: 975
effective length of database: 10,329,639
effective search space: 10071398025
effective search space used: 10071398025
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)