BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZD08FM1.SCF screened BAC_end
(958 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1487 1643 0.0
>3x_Contig1487
Length = 9002
Score = 1643 bits (829), Expect = 0.0
Identities = 839/841 (99%), Gaps = 1/841 (0%)
Strand = Plus / Minus
Query: 87 tgtcaattcctctgtgatgtcctttaatgatactgtacgtctggatgacattgtaggtgc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8702 tgtcaattcctctgtgatgtcctttaatgatactgtacgtctggatgacattgtaggtgc 8643
Query: 147 agcagcagctagcggttgatctgtcattcccttgtcttcatcatcttctgaaagttcagt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8642 agcagcagctagcggttgatctgtcattcccttgtcttcatcatcttctgaaagttcagt 8583
Query: 207 atatgatgtccgtagtcgcgatggtcgtcttgctagcgaatttccagattgcatggatct 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8582 atatgatgtccgtagtcgcgatggtcgtcttgctagcgaatttccagattgcatggatct 8523
Query: 267 ttttcttaacgtcttcagaccagacaacgattgagcttgagtctcattggctgtcgggga 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8522 ttttcttaacgtcttcagaccagacaacgattgagcttgagtctcattggctgtcgggga 8463
Query: 327 acgaccccccaggttcatattctctagtgtattttgaaccagttctaaataattctcagg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8462 acgaccccccaggttcatattctctagtgtattttgaaccagttctaaataattctcagg 8403
Query: 387 tttaacattaggatgttggtctgcccttacccataataaattctgtcccaatgattcgtt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8402 tttaacattaggatgttggtctgcccttacccataataaattctgtcccaatgattcgtt 8343
Query: 447 atgttttgattcatcattcccatcacttgttgatgacgtaccagaaatggatctagagat 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8342 atgttttgattcatcattcccatcacttgttgatgacgtaccagaaatggatctagagat 8283
Query: 507 ggatccgctgagtactctcctccttggaagtggctcatgccgataattattatttatcat 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8282 ggatccgctgagtactctcctccttggaagtggctcatgccgataattattatttatcat 8223
Query: 567 atttgcctgagcgtctttatccaagtactcggcatttgtaacgtccatgctatcatctgt 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8222 atttgcctgagcgtctttatccaagtactcggcatttgtaacgtccatgctatcatctgt 8163
Query: 627 aaaagaataactatcatcctcttcttcaactgctgccccagcagtggtagtatcatcctc 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8162 aaaagaataactatcatcctcttcttcaactgctgccccagcagtggtagtatcatcctc 8103
Query: 687 actcaaacttgaatgagacaattgtgtttcctgattatcatcatttccatactcttgttc 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8102 actcaaacttgaatgagacaattgtgtttcctgattatcatcatttccatactcttgttc 8043
Query: 747 cccttgttctgatttagtagtttcagtttttatcgacgaggtagcgatgtagggcgttcc 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8042 cccttgttctgatttagtagtttcagtttttatcgacgaggtagcgatgtagggcgttcc 7983
Query: 807 tgtatcttgatccgttgctgttcctgttccttgtcgtgatgatacacggtattccaattc 866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7982 tgtatcttgatccgttgctgttcctgttccttgtcgtgatgatacacggtattccaattc 7923
Query: 867 aggatccattagtagatccatggatcctattgaaagggcgtttcaggttctttacatgct 926
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 7922 aggatccattagtagatccatggatcctattgaaa-ggcgtttcaggttcttcacatgct 7864
Query: 927 t 927
|
Sbjct: 7863 t 7863
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6845
Number of Sequences: 1807
Number of extensions: 6845
Number of successful extensions: 67
Number of sequences better than 1.0e-20: 1
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)