BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZD08RM1.SCF screened BAC_end
(963 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1477 809 0.0
3x_Contig839 672 0.0
>3x_Contig1477
Length = 9322
Score = 809 bits (408), Expect = 0.0
Identities = 451/462 (97%), Gaps = 3/462 (0%)
Strand = Plus / Minus
Query: 502 aagaaaaagaaaatagcatagaattctcacaagatgatttatccacaaaggaaaagaatt 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9322 aagaaaaagaaaatagcatagaattctcacaagatgatttatccacaaaggaaaagaatt 9263
Query: 562 ttgtaaatgcaaaatatctcttgctaagaagaattctccagaacccggagttagctccat 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9262 ttgtaaatgcaaaatatctcttgctaagaagaattctccagaacccggagttagctccat 9203
Query: 622 tcttcaaggatccagcggaaaatcctttaagaactaaattcttaggccaagttattgaat 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9202 tcttcaaggatccagcggaaaatcctttaagaactaaattcttaggccaagttattgaat 9143
Query: 682 ggtgtttcaagccattcatcaaagagaaaggctgcgttccaaatttgacgactgcaagtt 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9142 ggtgtttcaagccattcatcaaagagaaaggctgcgttccaaatttgacgactgcaagtt 9083
Query: 742 acgctaacggtgttctgattacaattatagagcaagcacaggacacagttttcaaaagga 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9082 acgctaacggtgttctgattacaattatagagcaagcacaggacacagttttcaaaagga 9023
Query: 802 atctgattagattattgccgattttttgccggatattcctcttcctacgaagtgcctgtt 861
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 9022 atctgattagattattgccgattttttgccggatattcctcttcctacgaagtgcctg-t 8964
Query: 862 gagaaagaagactgtttc-nattncaaagagtatttgcccctctattccctacagtgaca 920
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 8963 gagaaagaagactgtttcaaattcaaaagagtatttgcccctctattccctacagtgaca 8904
Query: 921 cctcttttcggaattacagtagattcttatggtgactgatga 962
|||||| | ||| ||||||||||| |||||||||||||||
Sbjct: 8903 cctcttccggaaataacagtagattc-tatggtgactgatga 8863
>3x_Contig839
Length = 3352
Score = 672 bits (339), Expect = 0.0
Identities = 348/351 (99%)
Strand = Plus / Plus
Query: 42 gctttgaaaaaagcagttttcattttactagtgcaatttttagatatgaatatcgctcgc 101
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 2999 gctttgaaaaaagcagttttcagttcactagtgcaatttttagatatgaatatcgctcgc 3058
Query: 102 catgacaactacaagcatttgttcaacgatttctttgaagaagtagaaagggagaactcc 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3059 catgacaactacaagcatttgttcaacgatttctttgaagaagtagaaagggagaactcc 3118
Query: 162 aattatctgccggagttaggcccaattttggtaagattgatgtcagaacagtttttttct 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 3119 aattatctgccggagttaggcccaattttggtaagattgatgtcagaacagttttcttct 3178
Query: 222 tcagctaacagttggagttatgtgggtagggctctgtgtcgatcgtatattttacttttg 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3179 tcagctaacagttggagttatgtgggtagggctctgtgtcgatcgtatattttacttttg 3238
Query: 282 aagttgggacggttattttctaaagatatagtcggatatcatcaagctgtcgacgagttt 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3239 aagttgggacggttattttctaaagatatagtcggatatcatcaagctgtcgacgagttt 3298
Query: 342 ttcaacagtcttagtatcttttttagagtaacaaatgattctgtgctcgtg 392
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3299 ttcaacagtcttagtatcttttttagagtaacaaatgattctgtgctcgtg 3349
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8693
Number of Sequences: 1807
Number of extensions: 8693
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 2
length of query: 963
length of database: 10,358,551
effective HSP length: 16
effective length of query: 947
effective length of database: 10,329,639
effective search space: 9782168133
effective search space used: 9782168133
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)