BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZD09RM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1802 775 0.0
>3x_Contig1802
Length = 45229
Score = 775 bits (391), Expect = 0.0
Identities = 414/419 (98%), Gaps = 2/419 (0%)
Strand = Plus / Minus
Query: 44 gcttgattaactgatcaattaagatttcgagacttttttcctaaaactgcatgttacttg 103
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 2609 gcttgattaactgatcaattaagacttcgagacttttttcctaaaactgcatgttacttg 2550
Query: 104 acttacctcagacaaccattcagcaaggaatgggattcgagttgagagaantattccgaa 163
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 2549 acttacctcagacaaccattcagcaaggaatgggattcgagttgagagaa-tattccgaa 2491
Query: 164 aatagcgagatcaagacggatatggacttacaatagtgtgctcggtattaaaccttgcac 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2490 aatagcgagatcaagacggatatggacttacaatagtgtgctcggtattaaaccttgcac 2431
Query: 224 cagaaaactgtgggtatcttgtgaaatgactacagtgtcttatgtgaaattccaatacat 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2430 cagaaaactgtgggtatcttgtgaaatgactacagtgtcttatgtgaaattccaatacat 2371
Query: 284 catcactaggagcaggttagttggctgaaagtggtaacaaaagaaaagaagtttgaatgt 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2370 catcactaggagcaggttagttggctgaaagtggtaacaaaagaaaagaagtttgaatgt 2311
Query: 344 acaaagaagaaacgatcaacgcgaataactttatttcagcctgtgggcctaggaacagta 403
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 2310 acaaagaagaaacgatcaacgcgaataactttatttcagcctgtgggcctagaaacagta 2251
Query: 404 tgaaacagtgcacgagtcgaaaccttgctttcagtggtattaacagattaggcaaaaaa 462
|||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct: 2250 tgaaacagtgcacgagtcgaaa-cttgctttcagtggtattaacagaataggcaaaaaa 2193
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 19,521
Number of Sequences: 1807
Number of extensions: 19521
Number of successful extensions: 191
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)