BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZD10FM1.SCF screened BAC_end
(912 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig942 991 0.0
3x_Contig508 410 e-114
>3x_Contig942
Length = 3614
Score = 991 bits (500), Expect = 0.0
Identities = 568/587 (96%), Gaps = 3/587 (0%)
Strand = Plus / Plus
Query: 327 ccaataggtccaagttaccaatagcttctattgtatcttctctcttctcaccaggaggat 386
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 4 ccaataggtccaagttaccaataggttatattgtatcttctctcttctcaccaggaggat 63
Query: 387 gtgtaattgatgatacaacgaaagtattgcttgca-gtgtaataaataccctccaccaat 445
||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||
Sbjct: 64 gtgtaattgatgatacaacgaaagtattgcttgcaagtgtaataaataccctcgacgaat 123
Query: 446 acaatacatccaggaacataataagttcccttcgttggtatagcttgctgaaggtgcaat 505
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 acaatacatccaggaaaataataagttcccttcgttggtatagcttgctgaaggtgcaat 183
Query: 506 tcaa-tgctaccgctggggtcttctaaactccaattccccttggaattctgatccagtag 564
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 tcaaatgctagcgctggggtcttctaaactccaattccccttggaattctgatccagtag 243
Query: 565 tccaagcaatagaaagttcttaccatcatgccctagtaagttntttatttgcgttatctt 624
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 244 tccaagcaatagaaagttcttaccatcatgccctagtaagttttttatttgcgttatctt 303
Query: 625 catatatgatgctgaattaagtggagacacatcagattcattcatatgctttcccatctc 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 catatatgatgctgaattaagtggagacacatcagattcattcatatgctttcccatctc 363
Query: 685 tataatagaagataaaggattgaatatgtcattattctgaaatttttcgtttctaagtac 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tataatagaagataaaggattgaatatgtcattattctgaaatttttcgtttctaagtac 423
Query: 745 cttgtctttttatatgtgatatcgtgtcgtaaatagggaaactttggactcaacattagg 804
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 cttgtcttttataatgtgatatcgtgtcgtaaatagggaaactttggactcaacattagg 483
Query: 805 aaagtttaagttttgcgatcgaaagcatgttttttttcacctcttttagtcgaggtacgt 864
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 484 -aagtttaagttttgcgatcgaaagcatgtttttttcaacctctttaggtcgaggtacgt 542
Query: 865 atatgtactgtcttttcgtatgggcatacgtgaaaatttgttgatta 911
||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 543 atatgtactgtcttttcgtatggtcatacgtgaaagtttgttgatta 589
>3x_Contig508
Length = 2437
Score = 410 bits (207), Expect = e-114
Identities = 207/207 (100%)
Strand = Plus / Plus
Query: 90 gatgaaccgggacggatacaaaagaaccattaaacacgatcgctactggaggatccgttg 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2231 gatgaaccgggacggatacaaaagaaccattaaacacgatcgctactggaggatccgttg 2290
Query: 150 ttaacttgtcaaatgttttctttagtccatccattgtagtcatttcatccaaatatatgt 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2291 ttaacttgtcaaatgttttctttagtccatccattgtagtcatttcatccaaatatatgt 2350
Query: 210 cccctccgagaatgacaaatttgttatcgctgagctcttgttcaaggtaatgcaatcgta 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2351 cccctccgagaatgacaaatttgttatcgctgagctcttgttcaaggtaatgcaatcgta 2410
Query: 270 tttttaaatctttatctaaccttgcca 296
|||||||||||||||||||||||||||
Sbjct: 2411 tttttaaatctttatctaaccttgcca 2437
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6243
Number of Sequences: 1807
Number of extensions: 6243
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 2
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)