BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZD10RM1.SCF screened BAC_end
(909 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1538 1614 0.0
>3x_Contig1538
Length = 9120
Score = 1614 bits (814), Expect = 0.0
Identities = 847/854 (99%), Gaps = 3/854 (0%)
Strand = Plus / Minus
Query: 49 tctgaagatgaggaatctttggtattgaaattgatggatacgttactcgaatacggggca 108
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 8223 tctgaagatgaggaatcagtggtattgaaattgatggatacgttactcgaatacggggca 8164
Query: 109 ggatggaacttcctagattacgagaataagcatattggcgaccttgtcttggagaggaag 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8163 ggatggaacttcctagattacgagaataagcatattggcgaccttgtcttggagaggaag 8104
Query: 169 tatccacaagaccattgcatatatcaacgtatcgtggacgcaggtgtattggcggaacta 228
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 8103 tatccacaagaccattgcatatatcaacgtatcgtggacgcaggtgtatcggcggaacta 8044
Query: 229 ctactaagaaagatagacggtggtgaaattgaattcattgaagatccagaagatgctgcc 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8043 ctactaagaaagatagacggtggtgaaattgaattcattgaagatccagaagatgctgcc 7984
Query: 289 actgaggctgccactgaggctgccactgaggctgaagtcattgaaggagtgacaaagggg 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7983 actgaggctgccactgaggctgccactgaggctgaagtcattgaaggagtgacaaagggg 7924
Query: 349 tcggaggaagcaccatttgaggatgcgactgcagcagaccaggctacatatctaaagacc 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7923 tcggaggaagcaccatttgaggatgcgactgcagcagaccaggctacatatctaaagacc 7864
Query: 409 gacttggaatacacagacgatgctcttgtcactaaagaaaacagagacggtgtcatgatg 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7863 gacttggaatacacagacgatgctcttgtcactaaagaaaacagagacggtgtcatgatg 7804
Query: 469 gattgggagaccgatatcatgtcaatggcagccaaatcactagtatctaccaggtccaca 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7803 gattgggagaccgatatcatgtcaatggcagccaaatcactagtatctaccaggtccaca 7744
Query: 529 gatgaatgtgtcgtactaaatatcggatttggtatggggatcatagacaatttcatccag 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7743 gatgaatgtgtcgtactaaatatcggatttggtatggggatcatagacaatttcatccag 7684
Query: 589 gatgagaaagtgaccaaacactacatctgtgaagcccatccagacgtactggccaaaatg 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7683 gatgagaaagtgaccaaacactacatctgtgaagcccatccagacgtactggccaaaatg 7624
Query: 649 aaggaaactggttggttcgataaagaaaacgttgttatactcgagggtagatggcaatct 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7623 aaggaaactggttggttcgataaagaaaacgttgttatactcgagggtagatggcaatct 7564
Query: 709 cgtctaaacgaacttttggatcaaggagaagtgtttttcgacggcatatattacgatacg 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7563 cgtctaaacgaacttttggatcaaggagaagtgtttttcgacggcatatattacgatacg 7504
Query: 769 tttcagtgaacattaccaagatatgctggacttgtacgacgtgattgtcggactactgaa 828
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7503 -ttcagtgaacattaccaagatatgctggacttgtacgacgtgattgtcggactactgaa 7445
Query: 829 accaga-gttacgttttcgttctttaac-gattgggggctgatagacccgtttgttacga 886
|||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 7444 accagagggtacgttttcgttctttaacggattgggggctgatagacccgtttgttacga 7385
Query: 887 cgtttatcgtaaga 900
||||||||||||||
Sbjct: 7384 cgtttatcgtaaga 7371
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5589
Number of Sequences: 1807
Number of extensions: 5589
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 909
length of database: 10,358,551
effective HSP length: 16
effective length of query: 893
effective length of database: 10,329,639
effective search space: 9224367627
effective search space used: 9224367627
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)