BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZD11FM1.SCF screened BAC_end
(960 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1620 1562 0.0
>3x_Contig1620
Length = 12263
Score = 1562 bits (788), Expect = 0.0
Identities = 851/866 (98%), Gaps = 5/866 (0%)
Strand = Plus / Minus
Query: 87 taacttcatcgacataatcctcaagctattaatgcaaaatgattataactccgaaatttc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1942 taacttcatcgacataatcctcaagctattaatgcaaaatgattataactccgaaatttc 1883
Query: 147 tttccttaaagcaaccgagattataactagagaatcgttgaaggagccaacattatcaca 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1882 tttccttaaagcaaccgagattataactagagaatcgttgaaggagccaacattatcaca 1823
Query: 207 agaagaaattaataaattcgaagagggggttagtttatatggaagcgaattacaccctgt 266
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1822 agaagaaattaagaaattcgaagagggggttagtttatatggaagcgaattacaccctgt 1763
Query: 267 ttgtaagcatgttggaacgcaatcaatgtcaatgattgttcgctattattattactggaa 326
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1762 ttgtaagcatgttgga-cgcaatcaatgtcaatgattgttcgctattattattactggaa 1704
Query: 327 aaagactccgaatgggagaagaatctggggaaattttaagggcagagcgaagaacagaaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1703 aaagactccgaatgggagaagaatctggggaaattttaagggcagagcgaagaacagaaa 1644
Query: 387 gaagcaaagtattgatgattcaactaacaagaagtctagttccgataaaggtgataaaaa 446
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 1643 gaagcaaagtattgatgattcaactaacaagaagtctagttccaaaaaaggtgataaaaa 1584
Query: 447 ttctaaaaggataccgaaaaagaaagcacaatcgacacaacttttgaaacacattgatga 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1583 ttctaaaaggataccgaaaaagaaagcacaatcgacacaacttttgaaacacattgatga 1524
Query: 507 ctcttcttttgactctgaacaaatatcagatgtaaaaaaatgcttccaatgcatgttttg 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1523 ctcttcttttgactctgaacaaatatcagatgtaaaaaaatgcttccaatgcatgttttg 1464
Query: 567 ttctttagattattcaccattatggtatagggttactggtgggtcagaggatgatcacat 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1463 ttctttagattattcaccattatggtatagggttactggtgggtcagaggatgatcacat 1404
Query: 627 tcatagaagacttacgaccggagtaaatgaaaaagtttcaggtagtgatagcgagaaagc 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1403 tcatagaagacttacgaccggagtaaatgaaaaagtttcaggtagtgatagcgagaaagc 1344
Query: 687 caaacaggttgaaaaagataatgagaaactgaatgccctttgtataagatgtgcaaggat 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1343 caaacaggttgaaaaagataatgagaaactgaatgccctttgtataagatgtgcaaggat 1284
Query: 747 gtggaggcgttacggtattagatggtcatctcctatcgatgttntaagacaactttatgg 806
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1283 gtggaggcgttacggtattagatggtcatctcctatcgatgttttaagacaactttatgg 1224
Query: 807 tagtagttcttcatcggtccagggtgcgataaaggacttactgggaggat-atgacgaan 865
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 1223 tagtagttcttcatcggtccagggtgcgataaaggacttact-ggaggataatgacgaa- 1166
Query: 866 caggcaa-ttgntgttccactaatcaggcctttttcaaaaatctggactgggaactagtg 924
||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1165 caggcaatttgttgttccactaatcaggccttttcaaaaaatctggactgggaactagtg 1106
Query: 925 atagatacggaaatcatcactaaaca 950
|||||||||||| |||||||||||
Sbjct: 1105 atagatacggaatcaatcactaaaca 1080
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7405
Number of Sequences: 1807
Number of extensions: 7405
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 960
length of database: 10,358,551
effective HSP length: 16
effective length of query: 944
effective length of database: 10,329,639
effective search space: 9751179216
effective search space used: 9751179216
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)