BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZD11RM1.SCF screened BAC_end
(959 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1127 1643 0.0
>3x_Contig1127
Length = 4949
Score = 1643 bits (829), Expect = 0.0
Identities = 889/909 (97%)
Strand = Plus / Plus
Query: 48 ctttacccatttcaaaccgtctttatcgattaaatttattccatgggagacaaatagtgt 107
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 404 ctttacccatttcaaaccgtcgacatcgattaaatttattccatgggagacaaatagtgt 463
Query: 108 cttgagaaacatttgagcgtttttgggtggtgatacataacatttctttaaatctgtgga 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 cttgagaaacatttgagcgtttttgggtggtgatacataacatttctttaaatctgtgga 523
Query: 168 tggtaaatacactctgatcccagatggagccaaatacacagccacttcatgttttaggct 227
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 524 tggtaaatacactctgatcccagatggagccaaatacacagccacttcatgtttgaggct 583
Query: 228 ctctgcattcaacttcgataaacccaaatccttggaacaaattgcaacagtcaaatctcc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 ctctgcattcaacttcgataaacccaaatccttggaacaaattgcaacagtcaaatctcc 643
Query: 288 attttcaaatagatgtggatcaaagtgtaagattttggtcgaaaaggtatatgattcctg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 attttcaaatagatgtggatcaaagtgtaagattttggtcgaaaaggtatatgattcctg 703
Query: 348 aaatatgcatgagtttccaaagggcacgatggtttcattggaggatagggtcaaattgac 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 aaatatgcatgagtttccaaagggcacgatggtttcattggaggatagggtcaaattgac 763
Query: 408 atatatcatacgcctgagagccttcataaagatggcatatggggtaggcaagtgaggttt 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 atatatcatacgcctgagagccttcataaagatggcatatggggtaggcaagtgaggttt 823
Query: 468 tgagaattctggggtgaagtgacccttccgctctggctggggtgactccgattcgttatt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 tgagaattctggggtgaagtgacccttccgctctggctggggtgactccgattcgttatt 883
Query: 528 cagctcaaggtttaactctggtaatggatcatcgttaatactaaaacaccataactccct 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884 cagctcaaggtttaactctggtaatggatcatcgttaatactaaaacaccataactccct 943
Query: 588 ggaaaaaagagctgcaagtactttggggtttttcctccttaggaacaactctgcttgaat 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 944 ggaaaaaagagctgcaagtactttggggtttttcctccttaggaacaactctgcttgaat 1003
Query: 648 tgaccattgattatctgccttgctaggtacatattggtgatagtttatttgtttgacagt 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1004 tgaccattgattatctgccttgctaggtacatattggtgatagtttatttgtttgacagt 1063
Query: 708 ttctaacctgtataaattggtaacgatgtcctccaatcgacatgcgtccccaacctcctt 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1064 ttctaacctgtataaattggtaacgatgtcctccaatcgacatgcgtccccaacctcctt 1123
Query: 768 tttcatggtttccgttgctctgatgaaaagtaagctggatagtcagactgattaggatgc 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1124 tttcatggtttccgttgctctgatgaaaagtaagctggatagtcagactgattaggatgc 1183
Query: 828 aacggtactccaaaaattcgtacttgttaagagatgctgtctagttaccttctttttaaa 887
||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1184 aacggtacttcaaaaatccgtacttgttaagagatgctgtctagttaccttcttttaaaa 1243
Query: 888 atatacgaatttatcttggagtattacttcttattataatgaatcgcctgatccttatta 947
||||||| ||||||| | ||| ||| ||||| |||||||||||| ||||| |||| |
Sbjct: 1244 ttatacgattttatctcgagttatcactacttataataatgaatcgcttgatcattataa 1303
Query: 948 aaccaaaac 956
||| |||||
Sbjct: 1304 aacaaaaac 1312
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6898
Number of Sequences: 1807
Number of extensions: 6898
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 959
length of database: 10,358,551
effective HSP length: 16
effective length of query: 943
effective length of database: 10,329,639
effective search space: 9740849577
effective search space used: 9740849577
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)