BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZE04FM1.SCF screened BAC_end
(958 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1673 1520 0.0
>3x_Contig1673
Length = 13723
Score = 1520 bits (767), Expect = 0.0
Identities = 849/873 (97%), Gaps = 4/873 (0%)
Strand = Plus / Minus
Query: 88 taaattcagtgatgttttccgtcttttaagtgcagtatctgcgttggatttcattccaaa 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5506 taaattcagtgatgttttccgtcttttaagtgcagtatctgcgttggatttcattccaaa 5447
Query: 148 ggatcagcacagttctttcatggaaaaaaatttcttaagggcaaaaaccgtagaggagat 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5446 ggatcagcacagttctttcatggaaaaaaatttcttaagggcaaaaaccgtagaggagat 5387
Query: 208 tatgaagttgagaaagcaggtgatgttcatcatcaggtcagttacttcgagagaaaatgt 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5386 tatgaagttgagaaagcaggtgatgttcatcatcaggtcagttacttcgagagaaaatgt 5327
Query: 268 agctgtaaatgttaaagacgaagacttgaagagctcgatccccaccgatgttcaaatcaa 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5326 agctgtaaatgttaaagacgaagacttgaagagctcgatccccaccgatgttcaaatcaa 5267
Query: 328 attactcaagcaaatgatcacagcaggatttatcgaccaggtggccgttcgcgcagacca 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5266 attactcaagcaaatgatcacagcaggatttatcgaccaggtggccgttcgcgcagacca 5207
Query: 388 gttattcccggaagacgttactatcaacaaaaccaacattttcaatatcccttatgttcc 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5206 gttattcccggaagacgttactatcaacaaaaccaacattttcaatatcccttatgttcc 5147
Query: 448 agtccttgctgagaaaacatcttctttggatgatatctttgtttatattcatccaacctc 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5146 agtccttgctgagaaaacatcttctttggatgatatctttgtttatattcatccaacctc 5087
Query: 508 aattctcaacaattctggcgagcaacctccgaaatacttggttttccaatcactacatgt 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5086 aattctcaacaattctggcgagcaacctccgaaatacttggttttccaatcactacatgt 5027
Query: 568 caataaaaataatgaaaaggcgaaaacaaggatgaagtctctttgtgacattaaaagcac 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5026 caataaaaataatgaaaaggcgaaaacaaggatgaagtctctttgtgacattaaaagcac 4967
Query: 628 gccattggctaacgttgcaagaaagggctcgttactcacttacggaaaaccaatcactgg 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4966 gccattggctaacgttgcaagaaagggctcgttactcacttacggaaaaccaatcactgg 4907
Query: 688 acaaggtttgaaacctattgatttatcgccaacagaaagattctgctatgttgttcctag 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4906 acaaggtttgaaacctattgatttatcgccaacagaaagattctgctatgttgttcctag 4847
Query: 748 atttggatctttgcatgatagcgacatcaagattggttgggaactncatcctatccctgt 807
||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 4846 atttggatcttgcaatgatagcgacatcaagattggttgggaactcaatcctatccctgt 4787
Query: 808 tcatcaagagaaagagaaaggtgtatgggacgggtcagaaatttcttactncaaaagcat 867
|||||||||||||||||||||||||| |||||| ||||||| |||||| |||||||||
Sbjct: 4786 tcatcaagagaaagagaaaggtgtat-ggacggtcaagaaattccttactccaaaagcat 4728
Query: 868 ttaaaaactatc-agcttncgaaagaccctagaactacaccagt-ccanttntagaaatt 925
|||||||||||| ||||| ||||||||||||||||||||||| | | || ||||| |
Sbjct: 4727 ttaaaaactatcaagcttcgaaaagaccctagaactacaccagtacaatttatagaatta 4668
Query: 926 attnactcatataatacc-attgcattgaaata 957
||| |||||||||||||| ||||||||| ||||
Sbjct: 4667 attaactcatataataccaattgcattggaata 4635
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7274
Number of Sequences: 1807
Number of extensions: 7274
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)