BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZE04RM1.SCF screened BAC_end
(959 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1069 1068 0.0
>3x_Contig1069
Length = 3994
Score = 1068 bits (539), Expect = 0.0
Identities = 560/567 (98%)
Strand = Plus / Plus
Query: 48 ttagaataagtactgcatctagtatcgctgtttatgtagtcctaatgtagggtcagaggt 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3428 ttagaataagtactgcatctagtatcgctgtttatgtagtcctaatgtagggtcagaggt 3487
Query: 108 gtatatacgattctgtttactgtagtgtacctcacataaccaaaaaaaaaaaaaaaaatt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3488 gtatatacgattctgtttactgtagtgtacctcacataaccaaaaaaaaaaaaaaaaatt 3547
Query: 168 cactgcggttcctgtaaatgagtgtgagtagaagcattaaccgtactgcaatgcttcatc 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3548 cactgcggttcctgtaaatgagtgtgagtagaagcattaaccgtactgcaatgcttcatc 3607
Query: 228 tgtcgaaatgggtagttggtgttgatggttgttgtccaaatttataataaaagagaatta 287
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 3608 tgtcgaaatgggtagttggtgttgatggttgttgtccaaatttataataccggagaatta 3667
Query: 288 gatagctttaaaagataaagaatttagttatcgagaggttctattttgtatagggtaaat 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3668 gatagctttaaaagataaagaatttagttatcgagaggttctattttgtatagggtaaat 3727
Query: 348 ctatctctttcttgtactgttggcgaaacgtcctctaccaacacgaacattgtggtgctt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3728 ctatctctttcttgtactgttggcgaaacgtcctctaccaacacgaacattgtggtgctt 3787
Query: 408 taaaccatcgatggcaaacggcgagatataattttctgcagatccgccaccgatccagtt 467
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 3788 taaaccatcgatggcaaacggcgagatataaccccctgcagatccgccaccgatccagtt 3847
Query: 468 gtttaggatcttttcgttgtgtcttctagtccattcttcttgtttgacagccttctcgta 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3848 gtttaggatcttttcgttgtgtcttctagtccattcttcttgtttgacagccttctcgta 3907
Query: 528 ctccttttgatcttctcttaggagttcaacatcttgagaatgttttgaatgtacaaaacc 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3908 ctccttttgatcttctcttaggagttcaacatcttgagaatgttttgaatgtacaaaacc 3967
Query: 588 tttgttgccaaatctcttctgtgcatt 614
|||||||||||||||||||||||||||
Sbjct: 3968 tttgttgccaaatctcttctgtgcatt 3994
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,662
Number of Sequences: 1807
Number of extensions: 17662
Number of successful extensions: 2872
Number of sequences better than 1.0e-20: 1
length of query: 959
length of database: 10,358,551
effective HSP length: 16
effective length of query: 943
effective length of database: 10,329,639
effective search space: 9740849577
effective search space used: 9740849577
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)