BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZE07FM1.SCF screened BAC_end
(957 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1296 1610 0.0
>3x_Contig1296
Length = 7334
Score = 1610 bits (812), Expect = 0.0
Identities = 857/873 (98%), Gaps = 1/873 (0%)
Strand = Plus / Minus
Query: 82 atcactgatcttggaggtccaagcgttgacacatcaaactctgtacgtaagaaccaagaa 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2362 atcactgatcttggaggtccaagcgttgacacatcaaactctgtacgtaagaaccaagaa 2303
Query: 142 aagaccagcatccccttatattttgggtaggcatagttaacaatttgttacactcatagc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2302 aagaccagcatccccttatattttgggtaggcatagttaacaatttgttacactcatagc 2243
Query: 202 acatacgtttcaatcacagaaaacctagtttaatctccacacaaaaatacctagcaaaca 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2242 acatacgtttcaatcacagaaaacctagtttaatctccacacaaaaatacctagcaaaca 2183
Query: 262 ttcacagagacatgaatggttttaattgtaccacaactcggaagtgtactggcaacacaa 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2182 ttcacagagacatgaatggttttaattgtaccacaactcggaagtgtactggcaacacaa 2123
Query: 322 atatataactcagacgtacgttctttcaaatttaaatatttatcctgtcttattctttag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2122 atatataactcagacgtacgttctttcaaatttaaatatttatcctgtcttattctttag 2063
Query: 382 ttggacagaatgagaaataattgtggaacggggcagaagagtgtgtggtatgaatttgtt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2062 ttggacagaatgagaaataattgtggaacggggcagaagagtgtgtggtatgaatttgtt 2003
Query: 442 tcaaaaaactcgataccatccgagaatattatttactattcggacctcaacagctcaggt 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2002 tcaaaaaactcgataccatccgagaatattatttactattcggacctcaacagctcaggt 1943
Query: 502 tcggagttccggcgtccacctggtgcagtaactgtctgtgatactcaaaactgagaaaat 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1942 tcggagttccggcgtccacctggtgcagtaactgtctgtgatactcaaaactgagaaaat 1883
Query: 562 accgagaaacgaacatcgaggttcgtaggaaaagcatcgatcggcacatgaaaaacatgc 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1882 accgagaaacgaacatcgaggttcgtaggaaaagcatcgatcggcacatgaaaaacatgc 1823
Query: 622 ttttgcgtattggaaatcggagcttgacattgtggaaacctagtatctatatcggaagaa 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1822 ttttgcgtattggaaatcggagcttgacattgtggaaacctagtatctatatcggaagaa 1763
Query: 682 aatccagttnttattttacacctggtttgaatacctttgtntcactgtgattagactttt 741
||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1762 aatccagtttttattttacacctggtttgaatacctttgttccactgtgattagactttt 1703
Query: 742 cacctccgacgtaatgccatcaccgctatttccagtcacgtaattgaagaggtactaatg 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1702 cacctccgacgtaatgccatcaccgctatttccagtcacgtaattgaagaggtactaatg 1643
Query: 802 agaatncacgtctttttcttttgttttctgttncacagctgagatcacaatgcgagtttt 861
||| | |||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1642 agattccacgtcttttccttttgttttctgtttcacagctgagatcacaatgcgagtttc 1583
Query: 862 gcattggtgatctatattcccagtttttaccctgacgtttggtaatactttatgacnnaa 921
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct: 1582 gcattggtgatctatattcccagtttttaacctgacgtttggtaatacttaatgacaaaa 1523
Query: 922 cagtnaaccctaatttctttaccagtagtaacc 954
|||| |||| ||| ||| |||||||||||||||
Sbjct: 1522 cagtaaaccataa-ttccttaccagtagtaacc 1491
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5817
Number of Sequences: 1807
Number of extensions: 5817
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)