BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZE07RM1.SCF screened BAC_end
(959 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig765 1715 0.0
>3x_Contig765
Length = 1688
Score = 1715 bits (865), Expect = 0.0
Identities = 906/915 (99%), Gaps = 4/915 (0%)
Strand = Plus / Minus
Query: 43 gctttgttgcgaatgctgctaatagaacagatacattttgtaccactattcctaataaaa 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1168 gctttgttgcgaatgctgctaatagaacagatacattttgtaccactattcctaataaaa 1109
Query: 103 ggacttttttagctgaacttttgataagcaaataattaaatagcggtgcaagaaataaac 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1108 ggacttttttagctgaacttttgataagcaaataattaaatagcggtgcaagaaataaac 1049
Query: 163 caaccccaaacgacaagccaccgatagcagcataatccaaatctgttcctgtctcgtatt 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1048 caaccccaaacgacaagccaccgatagcagcataatccaaatctgttcctgtctcgtatt 989
Query: 223 tatcactggtcatataatatgacaaatataccgagtatccagaagtggcaccccatgtac 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 988 tatcactggtcatataatatgacaaatataccgagtatccagaagtggcaccccatgtac 929
Query: 283 agaagttaaagacgaaagatgaaaacacaaccacccagccgtaaccaccgtcaggaacag 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928 agaagttaaagacgaaagatgaaaacacaaccacccagccgtaaccaccgtcaggaacag 869
Query: 343 aaatcttgttgtaatcatcctcgctagaatcagtcaaagattcaacagagcaagctgtag 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 aaatcttgttgtaatcatcctcgctagaatcagtcaaagattcaacagagcaagctgtag 809
Query: 403 cctctttgttaataatatcctgttcctgtaatttcattataaagggatcagcaagtgaat 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 cctctttgttaataatatcctgttcctgtaatttcattataaagggatcagcaagtgaat 749
Query: 463 agtcctatattagggttaccatgctaggtgtcagtacatgaattttacctttatttatcc 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 agtcctatattagggttaccatgctaggtgtcagtacatgaattttacctttatttatcc 689
Query: 523 attccggaaatattcaagatgtctgaattctttattttcatattctttgaagtatatata 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 attccggaaatattcaagatgtctgaattctttattttcatattctttgaagtatatata 629
Query: 583 tccaattctgaaagaaaaaaaatatcagtggaagattcatgactgaatataacttggaaa 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 tccaattctgaaagaaaaaaaatatcagtggaagattcatgactgaatataacttggaaa 569
Query: 643 aaaaaaatcagataacctgtggtcagcatttttgttagaatacccctcactgaggtctta 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 aaaaaaatcagataacctgtggtcagcatttttgttagaatacccctcactgaggtctta 509
Query: 703 caatcagaaaacattcaattccgatgtatggaaaacggtagtattaggttatctttgtag 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 caatcagaaaacattcaattccgatgtatggaaaacggtagtattaggttatctttgtag 449
Query: 763 ttacttagattatattaatgtgntaaataagctatgcaattatcggattaacgttgatgt 822
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 448 ttacttagattatattaatgtgttaaataagctatgcaattatcggattaacgttgatgt 389
Query: 823 ttcacttgcccccaggca-tagttccagaatacatctaatttcttcacctcttatcttta 881
|||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 388 ttcacttgcccc-aggcaatagttccagattacatctaatttcttcacctcttatcttta 330
Query: 882 gcatagcctctcattatgttgactatttggaccgtt-aaccatcgtttta-ttagtgtgg 939
|||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||
Sbjct: 329 gcatagcctctcattatgttgactatttgggccgttaaaccatcgttttagttagtgtgg 270
Query: 940 tggtgncttggtgtt 954
|| || |||||||||
Sbjct: 269 tgttgtcttggtgtt 255
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9704
Number of Sequences: 1807
Number of extensions: 9704
Number of successful extensions: 74
Number of sequences better than 1.0e-20: 1
length of query: 959
length of database: 10,358,551
effective HSP length: 16
effective length of query: 943
effective length of database: 10,329,639
effective search space: 9740849577
effective search space used: 9740849577
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)