BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC21ZE08FM1.SCF screened BAC_end
         (967 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1512                                                        1140   0.0  
3x_Contig849                                                          109   1e-23

>3x_Contig1512 
          Length = 8803

 Score = 1140 bits (575), Expect = 0.0
 Identities = 578/579 (99%)
 Strand = Plus / Minus

                                                                       
Query: 86  tacaaacaaagaaaattcgatgaagctattgaaaaatacaatgaagcttgggaaactcat 145
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 tacaaacaaagaaaattcgatgaagctattgaaaaatacaatgaagcttgggaaactcat 520

                                                                       
Query: 146 aatgacatcacgtatctaaacaaccgtgctgcagcagaatatgaaaaaggtgattacgag 205
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 aatgacatcacgtatctaaacaaccgtgctgcagcagaatatgaaaaaggtgattacgag 460

                                                                       
Query: 206 gcagccatcgaaactctaacaaaggctgtggaacaaggtagagaactcagagctgattac 265
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 gcagccatcgaaactctaacaaaggctgtggaacaaggtagagaactcagagctgattac 400

                                                                       
Query: 266 aaagtcatttcaaaatctttcgctcgtatgggtaactcttaccacaagcttggcgattta 325
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 aaagtcatttcaaaatctttcgctcgtatgggtaactcttaccacaagcttggcgattta 340

                                                                       
Query: 326 aagaaggctatcgactactatgaaaaatctctaactgaacatcgtaccccagatatctta 385
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 aagaaggctatcgactactatgaaaaatctctaactgaacatcgtaccccagatatctta 280

                                                                       
Query: 386 acgaaattaagaaacacagaaaaggaactcaagcaaaaggaagcagaatcttacatggac 445
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 acgaaattaagaaacacagaaaaggaactcaagcaaaaggaagcagaatcttacatggac 220

                                                                       
Query: 446 cctgaaaaggcagaagaagctagattacaaggtaaggaatacttcactaaggctgactgg 505
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 cctgaaaaggcagaagaagctagattacaaggtaaggaatacttcactaaggctgactgg 160

                                                                       
Query: 506 ccaaaggctgtcgaagcatacactgaaatgatcaaaagaaatccaaacgatgccagaggt 565
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 ccaaaggctgtcgaagcatacactgaaatgatcaaaagaaatccaaacgatgccagaggt 100

                                                                       
Query: 566 tactctaacagagctgcagctctatctaagttgatgtcattcgctgacgccattagagac 625
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99  tactctaacagagctgcagctctatctaagttgatgtcattcgctgacgccattagagac 40

                                                  
Query: 626 tgtgacaaagccatcgagaaggatccaaactttgtcaga 664
           |||||||||||||||||||| ||||||||||||||||||
Sbjct: 39  tgtgacaaagccatcgagaaagatccaaactttgtcaga 1


>3x_Contig849 
          Length = 3479

 Score =  109 bits (55), Expect = 1e-23
 Identities = 65/67 (97%), Gaps = 1/67 (1%)
 Strand = Plus / Minus

                                                                        
Query: 890  tgcatcaattttacaagaccctgtca-tgcaatctatactctcacaagctcagcaaaatc 948
            |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 3472 tgcatcaattttacaagaccctgtcaatgcaatctatactctcaaaagctcagcaaaatc 3413

                   
Query: 949  ctgctgc 955
            |||||||
Sbjct: 3412 ctgctgc 3406


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5973
Number of Sequences: 1807
Number of extensions: 5973
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 2
length of query: 967
length of database: 10,358,551
effective HSP length: 16
effective length of query: 951
effective length of database: 10,329,639
effective search space: 9823486689
effective search space used: 9823486689
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)