BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZE08RM1.SCF screened BAC_end
(960 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1801 1659 0.0
>3x_Contig1801
Length = 57606
Score = 1659 bits (837), Expect = 0.0
Identities = 900/916 (98%), Gaps = 4/916 (0%)
Strand = Plus / Plus
Query: 48 tgaaatataaaagaaggttgttatgaatcaaacgtattactaactttcactaaagatata 107
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 19751 tgaaatataaaagaaggttgcaatgaatcaaacgtattactaactttcactaaagatata 19810
Query: 108 taaaactgtgtggcgacaagtggtttgaacagtatcagaaggtgtgggtaatatgagcaa 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19811 taaaactgtgtggcgacaagtggtttgaacagtatcagaaggtgtgggtaatatgagcaa 19870
Query: 168 cgatttactggccaatttaaatgcgttcaagaacaaggtgaagacttcttcttctctcac 227
||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||
Sbjct: 19871 cgatttactggccaatttaaatgcgttcaagaacaaggtgaagacttctccagcgctcac 19930
Query: 228 tacaaggaaagttttagctaataaagatagagatggacaaacgaatgggaacggtaaatc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19931 tacaaggaaagttttagctaataaagatagagatggacaaacgaatgggaacggtaaatc 19990
Query: 288 tacggaagtgatagaagtggatgatccaaattccgatgagaaggatatgcctctgaagaa 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19991 tacggaagtgatagaagtggatgatccaaattccgatgagaaggatatgcctctgaagaa 20050
Query: 348 aagggccaagagtagtagcgtcgctccaacgggccagttggatagtacacatctttccac 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20051 aagggccaagagtagtagcgtcgctccaacgggccagttggatagtacacatctttccac 20110
Query: 408 gaagatgcttatagccacagaatatatccaagaaagaggggaagcagtaccggtagatca 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20111 gaagatgcttatagccacagaatatatccaagaaagaggggaagcagtaccggtagatca 20170
Query: 468 aatcgaatcatatctttcgttacctaaggataataatgtgattccgatgttaaaggggtt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20171 aatcgaatcatatctttcgttacctaaggataataatgtgattccgatgttaaaggggtt 20230
Query: 528 acaaaaattcaagtttgacccaaagaggaacactttacagtacgtatccatttacgatgt 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20231 acaaaaattcaagtttgacccaaagaggaacactttacagtacgtatccatttacgatgt 20290
Query: 588 gcattctgcggaggaattgctacaactattaagatcacaggcgacgttcaagggtatatc 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20291 gcattctgcggaggaattgctacaactattaagatcacaggcgacgttcaagggtatatc 20350
Query: 648 atgtaaagagttaaaagatggttggccacaatgttttgatacaatcgacgagttagaagc 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20351 atgtaaagagttaaaagatggttggccacaatgttttgatacaatcgacgagttagaagc 20410
Query: 708 aaagaacagaatccttgttctttcgacaaagaaggataattctccaaggtttgtctggta 767
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 20411 aaagaacagaatccttgttcttcggacaaagaaggataattctccaaggtttgtctggta 20470
Query: 768 taaccatgctggtccatcaaggcanatcgatgaagagttcgttacgatgtgggaagcttg 827
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 20471 taaccatgctggtccatcaaggcaaatcgatgaagagttcgttacgatgtgggaagcttg 20530
Query: 828 taagctacctcagcgtagtgaattaccaagaaaactatcagatttgggtctcaagcctgc 887
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 20531 taagctacctcagcgtagtgaattaccaagaaaactacaagatttgggtctcaagcctgc 20590
Query: 888 tagtgtggatcctgctacgatcaa-aatgagcaaa-cacaaggaaagaggtc-agaaacg 944
|||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||
Sbjct: 20591 tagtgtggatcctgctacgatcaagaatgagcaaaccacaaggaaagaggtcaagaaacg 20650
Query: 945 ttgatc-agaaagggt 959
| |||| |||||||||
Sbjct: 20651 tagatcaagaaagggt 20666
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7029
Number of Sequences: 1807
Number of extensions: 7029
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 960
length of database: 10,358,551
effective HSP length: 16
effective length of query: 944
effective length of database: 10,329,639
effective search space: 9751179216
effective search space used: 9751179216
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)