BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZE09FM1.SCF screened BAC_end
(981 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig900 1695 0.0
>3x_Contig900
Length = 3046
Score = 1695 bits (855), Expect = 0.0
Identities = 888/895 (99%), Gaps = 3/895 (0%)
Strand = Plus / Plus
Query: 87 ttgtgagatgcttcgtgtcagtacgctgttcggaaaccagtatataagaaggttttccaa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1387 ttgtgagatgcttcgtgtcagtacgctgttcggaaaccagtatataagaaggttttccaa 1446
Query: 147 tgggtcgatacatttagcgaagaacccgtggctcaagaggcgatctttggagcagctttc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1447 tgggtcgatacatttagcgaagaacccgtggctcaagaggcgatctttggagcagctttc 1506
Query: 207 gaaatcattaccagctgtgccgacgcctgttttggaagtagtgcacaaatgcagtgatga 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1507 gaaatcattaccagctgtgccgacgcctgttttggaagtagtgcacaaatgcagtgatga 1566
Query: 267 tgtacctttggatgaagaacaaaggttaacgataaaagactacttaacacacgaggaaac 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1567 tgtacctttggatgaagaacaaaggttaacgataaaagactacttaacacacgaggaaac 1626
Query: 327 agaaatacccactgttgacaggtccatcttgttgaaatatttgtatggtaagaaagagta 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1627 agaaatacccactgttgacaggtccatcttgttgaaatatttgtatggtaagaaagagta 1686
Query: 387 cgatatggtagaaaccatggccaagttacatttatttgataaagacggatactttctgga 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1687 cgatatggtagaaaccatggccaagttacatttatttgataaagacggatactttctgga 1746
Query: 447 aacatctactgtgaacaacgttcaagtttatttcgaagttctaatccagacaaagcaact 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1747 aacatctactgtgaacaacgttcaagtttatttcgaagttctaatccagacaaagcaact 1806
Query: 507 tgacaagttaacggaagaagctgttaagtacatatcacagttttctattaataagcaggg 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1807 tgacaagttaacggaagaagctgttaagtacatatcacagttttctattaataagcaggg 1866
Query: 567 aacatctgtgtacatggtaaattatttgttcgttaaattgtatcaaaatttctcgcctca 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1867 aacatctgtgtacatggtaaattatttgttcgttaaattgtatcaaaatttctcgcctca 1926
Query: 627 agatgccctatacatctggaccaaacttgtcagtgtttactacggacattgtgaattgac 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1927 agatgccctatacatctggaccaaacttgtcagtgtttactacggacattgtgaattgac 1986
Query: 687 tagtatggatatatatgggccgatactaaatcatttgtactatttctttaaggccagcaa 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1987 tagtatggatatatatgggccgatactaaatcatttgtactatttctttaaggccagcaa 2046
Query: 747 agaatcgcatcaatgtgtcctgccgttgttaaaacgtatgcaaaatgaggatggcataat 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2047 agaatcgcatcaatgtgtcctgccgttgttaaaacgtatgcaaaatgaggatggcataat 2106
Query: 807 gcccgcttcacatttagcatcgacattgataaactttttttcttcgtccagatggttttc 866
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 2107 gcccgcttcacatttagcatcgacattgataacttttttttcttcgtccagatggttttc 2166
Query: 867 agaagtggaaagg-tatggcactggaaagttgacagaaatttaccaattgtagcatcgga 925
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2167 agaagtggaaaggatatggcactggaaagttgacagaaatttaccaattgtagcatcgga 2226
Query: 926 tcttaacagc-atgatgagaagtagatgtcattttcgtgatggggataccgttat 979
|| ||||||| ||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 2227 tc-taacagcaatgatgagaagtagatgtcatttccgtgattgggataccgttat 2280
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6944
Number of Sequences: 1807
Number of extensions: 6944
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 981
length of database: 10,358,551
effective HSP length: 16
effective length of query: 965
effective length of database: 10,329,639
effective search space: 9968101635
effective search space used: 9968101635
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)