BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZE09RM1.SCF screened BAC_end
(983 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig362 722 0.0
>3x_Contig362
Length = 1532
Score = 722 bits (364), Expect = 0.0
Identities = 380/384 (98%), Gaps = 1/384 (0%)
Strand = Plus / Minus
Query: 44 gcttcttgttcggattctatgacatgaagcaaaagggaaaatcgaagaagaagaatattt 103
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 386 gcttcttgttcggattctatgacaagaagcaaaagggaaaatcgaagaagaagaatattt 327
Query: 104 tgtccaaagagtactggatgaaggatgagagtgcaaaagaatgtttcaactgtgctaagc 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tgtccaaagagtactggatgaaggatgagagtgcaaaagaatgtttcaactgtgctaagc 267
Query: 164 -catttacaacctttagaagaaaacatcattgtcgaatttgcggacaaattttctgcttt 222
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 266 gcatttacaacctttagaagaaaacatcattgtcgaatttgcggacaaattttctgcagt 207
Query: 223 agctgtagtttcctaataactggtgagagctttggttatagtggacgaatgagaatatgt 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 agctgtagtttcctaataactggtgagagctttggttatagtggacgaatgagaatatgt 147
Query: 283 ggcaagtgctacgaacactctatgaactacgaggattccagtgaggaagagtcagaagaa 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 ggcaagtgctacgaacactctatgaactacgaggattccagtgaggaagagtcagaagaa 87
Query: 343 gaaatcattcatgatcaagtaagcagtagaaacattgatgatgatgccccatctttaaac 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 gaaatcattcatgatcaagtaagcagtagaaacattgatgatgatgccccatctttaaac 27
Query: 403 aacgatgacatacaaagtatcctt 426
||||||||||||||||||||||||
Sbjct: 26 aacgatgacatacaaagtatcctt 3
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8510
Number of Sequences: 1807
Number of extensions: 8510
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 983
length of database: 10,358,551
effective HSP length: 16
effective length of query: 967
effective length of database: 10,329,639
effective search space: 9988760913
effective search space used: 9988760913
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)