BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZE10FM1.SCF screened BAC_end
(956 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1588 1485 0.0
>3x_Contig1588
Length = 14692
Score = 1485 bits (749), Expect = 0.0
Identities = 843/861 (97%), Gaps = 10/861 (1%)
Strand = Plus / Minus
Query: 86 tgtcacaattgactagagaagacccctcccttgtggtaacacatgatgaggagactggac 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8547 tgtcacaattgactagagaagacccctcccttgtggtaacacatgatgaggagactggac 8488
Query: 146 aaactttgttgagcggtatgggggagttacacttggatattgcgagagatagactattga 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8487 aaactttgttgagcggtatgggggagttacacttggatattgcgagagatagactattga 8428
Query: 206 acgaattaaatgcacaagttgatgttgaaagagttattgtctcctacaaagaaacattaa 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8427 acgaattaaatgcacaagttgatgttgaaagagttattgtctcctacaaagaaacattaa 8368
Query: 266 atcattctacccaagaaaaaacgttggaaaccgatgatggatacaagattaccgctgtaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8367 atcattctacccaagaaaaaacgttggaaaccgatgatggatacaagattaccgctgtaa 8308
Query: 326 tcgagccattggacgaagagatgaaagctaaagcgaagaaggacgaagaatggttctcgt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8307 tcgagccattggacgaagagatgaaagctaaagcgaagaaggacgaagaatggttctcgt 8248
Query: 386 tagcgaatgataataatttcatgatcatggaaaagcacaccaagtatgacccggataaaa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8247 tagcgaatgataataatttcatgatcatggaaaagcacaccaagtatgacccggataaaa 8188
Query: 446 actggcctttccaagtgccttatgttgctgtcgtgaatgcgttattaccaagttctctag 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8187 actggcctttccaagtgccttatgttgctgtcgtgaatgcgttattaccaagttctctag 8128
Query: 506 ttgcattacaaagaggaggtaagatcggtgggttcccattgagctcttgtgtcattcgca 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8127 ttgcattacaaagaggaggtaagatcggtgggttcccattgagctcttgtgtcattcgca 8068
Query: 566 ttaaaaatgactgggatcttccaattgatgcgccatcgatttcaccattgttgactttaa 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8067 ttaaaaatgactgggatcttccaattgatgcgccatcgatttcaccattgttgactttaa 8008
Query: 626 gcagacagctatttactcagatactcttaggagaagatcaatctaactactctgttttag 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8007 gcagacagctatttactcagatactcttaggagaagatcaatctaactactctgttttag 7948
Query: 686 aaccagtcatgaatgtcgatgtcactgttcaaacagc-agacatgggacctgttattcaa 744
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 7947 aaccagtcatgaatgtcgatgtcactgttc-aacagcaagacatgggacctgttattcaa 7889
Query: 745 gatctgtctagtgcaag-aaagcaaatatcttgtctattg-agatgag-atact-atact 800
||||||||||||||||| |||||||||||||||||||||| ||||||| ||||| |||||
Sbjct: 7888 gatctgtctagtgcaagaaaagcaaatatcttgtctattgaagatgagaatactaatact 7829
Query: 801 gtcagcgagtctaacataaggttcc-acacattgcagac-agatgtggctgcctgtagat 858
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||
Sbjct: 7828 gtcagcgagtctaacataaggttccaacacattgcagacaagatgtggctgcctgaggat 7769
Query: 859 cctactttagaattcgcttaacttggtaaagaaggacagggcaccaagaatggtgaaagc 918
|||||||||||||||||| ||||||||||||||||||| |||||| | |||||||||||
Sbjct: 7768 cctactttagaattcgctaaacttggtaaagaaggaca-ggcacccaagatggtgaaagc 7710
Query: 919 ccacagcccttttgaaagaaa 939
||| ||| | |||||||||||
Sbjct: 7709 cca-agcacctttgaaagaaa 7690
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6502
Number of Sequences: 1807
Number of extensions: 6502
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)