BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZE10RM1.SCF screened BAC_end
(951 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1588 1592 0.0
>3x_Contig1588
Length = 14692
Score = 1592 bits (803), Expect = 0.0
Identities = 894/914 (97%), Gaps = 9/914 (0%)
Strand = Plus / Plus
Query: 43 cttctaaac-aggatatatct-tatggatt-aatggggttcggaatggggtgttcctgtt 99
||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 5730 cttctaaaccaggatatatctatatggattcaatggggttcggaatggggtgttcctgtt 5789
Query: 100 tgcaattgactttccaggctcctaatatcaataaggcacgttatttgtacgatactttgt 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5790 tgcaattgactttccaggctcctaatatcaataaggcacgttatttgtacgatactttgt 5849
Query: 160 tgaattttgcgccaattttcttggccgcaactgctgcctctccagtattcaaggtgttcc 219
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 5850 tgaattttgcgccaattttcttggccgcaactgctgcctctccagtattcaaggggttcc 5909
Query: 220 ttgcagatcaagacgtgcgttggaacgttatcgtaggtgcagttgatgatcgtactccat 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5910 ttgcagatcaagacgtgcgttggaacgttatcgtaggtgcagttgatgatcgtactccat 5969
Query: 280 atgaaagatcagtggagccattgctacccaagtataataacgggtatggtggtatcgcaa 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5970 atgaaagatcagtggagccattgctacccaagtataataacgggtatggtggtatcgcaa 6029
Query: 340 ctgaagattatgcttcaacggcacggatcaataaatcaaggtatagtgtagtggatttgt 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6030 ctgaagattatgcttcaacggcacggatcaataaatcaaggtatagtgtagtggatttgt 6089
Query: 400 acctcggtggtaacgagttctatgactccaagttcaacgacactgaggttcctatcaatg 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6090 acctcggtggtaacgagttctatgactccaagttcaacgacactgaggttcctatcaatg 6149
Query: 460 agaaagtattcaagagattggtagataacgaaaagttcaaacttgataaagacttggctc 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6150 agaaagtattcaagagattggtagataacgaaaagttcaaacttgataaagacttggctc 6209
Query: 520 gccatttcgcccatcttttcatcagagatccactggtcatcttcgaagaaaggattgacc 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6210 gccatttcgcccatcttttcatcagagatccactggtcatcttcgaagaaaggattgacc 6269
Query: 580 aggataacgaaacagaaactgaccatttcgaaaatatccaaagtactaattggcaatcgg 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6270 aggataacgaaacagaaactgaccatttcgaaaatatccaaagtactaattggcaatcgg 6329
Query: 640 tccggtttaaggtcccttcacaaagtgcgaccccagataataaaggagctcctggttgga 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6330 tccggtttaaggtcccttcacaaagtgcgaccccagataataaaggagctcctggttgga 6389
Query: 700 gggtcgaattcagacccatggaagttcaattgacagatttcgaaaatgctgcatattcca 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6390 gggtcgaattcagacccatggaagttcaattgacagatttcgaaaatgctgcatattcca 6449
Query: 760 atctcatttatttgttgttagaatctattcttacctttcgacgat-agattaatgcttac 818
||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 6450 atctcatttatttgttggtagaatctattcttacc-ttcgacgataagattaatgcttac 6508
Query: 819 atgtacatgtctgaaaattgg-aaaacatgnnaactgctcatcatcgtgacgctactttt 877
|||||||||||||||| |||| |||||||| |||||||||||||||||||||||| |||
Sbjct: 6509 atgtacatgtctgaaatttggaaaaacatggaaactgctcatcatcgtgacgctac-ttt 6567
Query: 878 gaagganaagtnctattggaaatccgacttctttgaccttttcaggtaa-acanaactgc 936
|||||| |||| |||||||||||||||||||| ||||| || |||||| ||| ||||||
Sbjct: 6568 gaaggagaagttctattggaaatccgacttctctgacc-ttcaaggtaagacagaactgc 6626
Query: 937 taagtatcgacgaa 950
||||||||||||||
Sbjct: 6627 taagtatcgacgaa 6640
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6599
Number of Sequences: 1807
Number of extensions: 6599
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 951
length of database: 10,358,551
effective HSP length: 16
effective length of query: 935
effective length of database: 10,329,639
effective search space: 9658212465
effective search space used: 9658212465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)