BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZE11FM1.SCF screened BAC_end
(955 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1669 1568 0.0
>3x_Contig1669
Length = 15503
Score = 1568 bits (791), Expect = 0.0
Identities = 855/869 (98%), Gaps = 6/869 (0%)
Strand = Plus / Plus
Query: 88 atatttagtctcagagtccagtttcttcgaactggcgtttctcttaaattgtgacatccg 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6036 atatttagtctcagagtccagtttcttcgaactggcgtttctcttaaattgtgacatccg 6095
Query: 148 ggattatttctattgataaaaactgtgcgaacctaaattattgctagcaaaagagggaag 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6096 ggattatttctattgataaaaactgtgcgaacctaaattattgctagcaaaagagggaag 6155
Query: 208 gcgatcgttattgtaataatctgtaattggattgcgtgagtagtagtagttctcttgaag 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6156 gcgatcgttattgtaataatctgtaattggattgcgtgagtagtagtagttctcttgaag 6215
Query: 268 tagttctgattgcttgttgttaatcttagaagtttaagcaagtatgcaaattttttataa 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6216 tagttctgattgcttgttgttaatcttagaagtttaagcaagtatgcaaattttttataa 6275
Query: 328 tgctttattggaaaatgttgagtataatttctttccaaaaaaagtacaattttagtatct 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6276 tgctttattggaaaatgttgagtataatttctttccaaaaaaagtacaattttagtatct 6335
Query: 388 gctcgcaacaagaaaagcacgcgagataggtatcgttacaaaaatggaactcttaaacgc 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6336 gctcgcaacaagaaaagcacgcgagataggtatcgttacaaaaatggaactcttaaacgc 6395
Query: 448 cgtttcaatccttgaactctttctctggagtattaagctatctaacttaacaatatttgt 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6396 cgtttcaatccttgaactctttctctggagtattaagctatctaacttaacaatatttgt 6455
Query: 508 ttcctattttcccagatctttcgaaatcaaattttacttttatcgaaaatgttcttattt 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6456 ttcctattttcccagatctttcgaaatcaaattttacttttatcgaaaatgttcttattt 6515
Query: 568 caatttttctattggtggcaatagggtaaaaaaggagggagggtaatcagaatattctat 627
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6516 caatttttctattggtgacaatagggtaaaaaaggagggagggtaatcagaatattctat 6575
Query: 628 tctagtactgcaatgaggagatagaaacagtgagatggagctggcacgaagttctacaag 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6576 tctagtactgcaatgaggagatagaaacagtgagatggagctggcacgaagttctacaag 6635
Query: 688 aatatgacagcagtcattatactggaccttcttgtgctttagttatttaggtgantatg- 746
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 6636 aatatgacagcagtcattatactggaccttcttgtgctttagttatttaggtga-tatgt 6694
Query: 747 ttgaattattatatgcagaattatgtangtgtctctgaaagctaccccaattaagagagt 806
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 6695 ttgaattattatatgcagaattatgtaggtgtctctgaaggctaccccaattaagagagt 6754
Query: 807 tgcacagcagatatcacanaggacgaacgttgccctgacttacggtggagaaaggatt-a 865
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct: 6755 tgcacagcagatatcacaaaggacgaacgttgccctgacttacggtggagaaaggattaa 6814
Query: 866 ggtataatcacgtagcggtggtacaacttcaagtcg-aactcctggtaatgttaacccta 924
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 6815 ggtataatcacgtagcggtggtacaacttc-agtcgaaactcctggtaatgttaacccta 6873
Query: 925 cttgtgtc-aaaatacgcgctaagtattg 952
|| ||| ||||||||||||| ||||||
Sbjct: 6874 ctgtggtcaaaaatacgcgctaggtattg 6902
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6728
Number of Sequences: 1807
Number of extensions: 6728
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 955
length of database: 10,358,551
effective HSP length: 16
effective length of query: 939
effective length of database: 10,329,639
effective search space: 9699531021
effective search space used: 9699531021
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)