BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZE11RM1.SCF screened BAC_end
(956 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1062 1703 0.0
>3x_Contig1062
Length = 5564
Score = 1703 bits (859), Expect = 0.0
Identities = 898/910 (98%), Gaps = 1/910 (0%)
Strand = Plus / Plus
Query: 45 gcttcaccagatttacaaccacttttctttgtgaaagtttcttcaccgattatgatttcc 104
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 4046 gcttcaccagatttacaaccactgaactttgtgaaagtttcttcaccgattatgatttcc 4105
Query: 105 tcgatgagcttacattcaccaagtttacatttttctggattgtcaaatgtcgaaacaact 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4106 tcgatgagcttacattcaccaagtttacatttttctggattgtcaaatgtcgaaacaact 4165
Query: 165 tcaccaccagtcacaagtgctagtcgttccacaccttcaaaatcagcatgttcattggag 224
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 4166 tcaccaccagtcacaagtgctagtcgttccacaccttcaaaatcagcatgttcaatggag 4225
Query: 225 ttaattcctagatctgtaaacatttgttcagggtagtcgtatatcaactgtctgttgatg 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4226 ttaattcctagatctgtaaacatttgttcagggtagtcgtatatcaactgtctgttgatg 4285
Query: 285 aacgtgttgatgttgaaattagcaatcttttcaatcttctttttcattttttcacgttca 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4286 aacgtgttgatgttgaaattagcaatcttttcaatcttctttttcattttttcacgttca 4345
Query: 345 gctttctctaattctgcaagcttagacgtagaatcaaccttgaacttggtaccaaagatc 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4346 gctttctctaattctgcaagcttagacgtagaatcaaccttgaacttggtaccaaagatc 4405
Query: 405 ttgaccttgtcagtatctagagaagtgttggcaatcaaaattttagcattttccacgcgc 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4406 ttgaccttgtcagtatctagagaagtgttggcaatcaaaattttagcattttccacgcgc 4465
Query: 465 tttggctggttgctaccaaatctttttggtaagataaatccttcatctaagaaagaatca 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4466 tttggctggttgctaccaaatctttttggtaagataaatccttcatctaagaaagaatca 4525
Query: 525 gaaagcttaccaccaatgatcttgataatttgaatatgttccaaattggtggaacccttc 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4526 gaaagcttaccaccaatgatcttgataatttgaatatgttccaaattggtggaacccttc 4585
Query: 585 aatctgagaatggcatctgttgccaattttgagaaatgatctttatcttgagacaaaatt 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4586 aatctgagaatggcatctgttgccaattttgagaaatgatctttatcttgagacaaaatt 4645
Query: 645 ttagatgaaagtgtcgtgtttgcaatgctgatcaaatcgttgtagaactcttccttatta 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4646 ttagatgaaagtgtcgtgtttgcaatgctgatcaaatcgttgtagaactcttccttatta 4705
Query: 705 ttcgagttatccacagcggccttctccaatgctgatagagcagccgcagatgcaattctg 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4706 ttcgagttatccacagcggccttctccaatgctgatagagcagccgcagatgcaattctg 4765
Query: 765 aaaccttcaataatggtttgtggggtggatttttccttgttcgaccaatttctcagcctc 824
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 4766 aaaccttcaataatggtttgt-gggtggatttttccttgttcgaccaatttctcagcctc 4824
Query: 825 tctcaatagctcagcacttaaaactgntacactggtagtaccgtcaccaacttcatcatt 884
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 4825 tctcaatagctcagcacttaaaactgtaacactggtagtaccgtcaccaacttcatcatc 4884
Query: 885 ttggactttactaatgttcacaagaactttagcgggcggaatgtccaatgggatcgattt 944
||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||
Sbjct: 4885 ttggactttactaatgttcacaagaactttagcggcgggattgtccaatggaatcgattt 4944
Query: 945 aagaatagta 954
||||||||||
Sbjct: 4945 aagaatagta 4954
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8676
Number of Sequences: 1807
Number of extensions: 8676
Number of successful extensions: 78
Number of sequences better than 1.0e-20: 1
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)