BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZF01RM1.SCF screened BAC_end
(875 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1463 1592 0.0
>3x_Contig1463
Length = 9363
Score = 1592 bits (803), Expect = 0.0
Identities = 823/827 (99%), Gaps = 2/827 (0%)
Strand = Plus / Plus
Query: 49 tcaccaagtggaggtagtgctgttcccggtgcaggaaacatgaccggaggtgttaatgat 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1767 tcaccaagtggaggtagtgctgttcccggtgcaggaaacatgaccggaggtgttaatgat 1826
Query: 109 tctgccatcccaggttctgacctgatgatgcattatccccaacagtatatgaaccataat 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1827 tctgccatcccaggttctgacctgatgatgcattatccccaacagtatatgaaccataat 1886
Query: 169 gggcaaaggccaatgttctggatgaatccggatttgaattctagtgccatcgacgacacc 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1887 gggcaaaggccaatgttctggatgaatccggatttgaattctagtgccatcgacgacacc 1946
Query: 229 actgcaggcgaagatccgcagaatcaggattcctttgtgcgcggtgcatcattcacttta 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1947 actgcaggcgaagatccgcagaatcaggattcctttgtgcgcggtgcatcattcacttta 2006
Query: 289 gaatcttctgaacaggggaatgatgccaaggtgccaggtgctaacacttctagaagacaa 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2007 gaatcttctgaacaggggaatgatgccaaggtgccaggtgctaacacttctagaagacaa 2066
Query: 349 actttccatgcagtgtcagctactgacttgttgaacaattctacttccagtcccactgaa 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2067 actttccatgcagtgtcagctactgacttgttgaacaattctacttccagtcccactgaa 2126
Query: 409 acgacggatgccactggtaccaatgcatcagcaacatcacccgaagcttctgcctcgaaa 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2127 acgacggatgccactggtaccaatgcatcagcaacatcacccgaagcttctgcctcgaaa 2186
Query: 469 aaagagatgcaggatcgtgtttatcctcaagctgctgcttacccttacaccggtgcattg 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2187 aaagagatgcaggatcgtgtttatcctcaagctgctgcttacccttacaccggtgcattg 2246
Query: 529 ctgcaaccaaatcctgtactatctggccatccactgggtcatcatccccatcctatcggt 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2247 ctgcaaccaaatcctgtactatctggccatccactgggtcatcatccccatcctatcggt 2306
Query: 589 tccccattccctggttacggttttaatacagctttctctcctgtcccgggccctactaac 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2307 tccccattccctggttacggttttaatacagctttctctcctgtcccgggccctactaac 2366
Query: 649 acgttgaatgcaggttctccagccatctccgcagatggcaaagaagcaaacagcagcggc 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2367 acgttgaatgcaggttctccagccatctccgcagatggcaaagaagcaaacagcagcggc 2426
Query: 709 gatccaagtggccaatctaaccgtcatgtacactctggaactaattccccaggattgagt 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2427 gatccaagtggccaatctaaccgtcatgtacactctggaactaattccccaggattgagt 2486
Query: 769 caacctggtagtctgccaatgtcaggacctaacccgtggatgtttgctgcttcttacggt 828
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 2487 caacctggtagtctgccaatgtcaggacctaacccgtggatgtttgctgctcctcacggt 2546
Query: 829 agtcctaactttcctggttccacaccctcatcattccgggtcacgca 875
||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 2547 agtcctaac-ttcctggttccacaccctcatca-tccgggtcacgca 2591
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3976
Number of Sequences: 1807
Number of extensions: 3976
Number of successful extensions: 20
Number of sequences better than 1.0e-20: 1
length of query: 875
length of database: 10,358,551
effective HSP length: 16
effective length of query: 859
effective length of database: 10,329,639
effective search space: 8873159901
effective search space used: 8873159901
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)