BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZF02RM1.SCF screened BAC_end
(958 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1777 1709 0.0
>3x_Contig1777
Length = 26319
Score = 1709 bits (862), Expect = 0.0
Identities = 904/914 (98%), Gaps = 3/914 (0%)
Strand = Plus / Plus
Query: 47 aaggtactggagagatctgtaggtgctgcacggttcccaccgaaacacttttcaaatatt 106
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 25065 aaggtactggagagatctgcaggtgctgcacggttcccaccgaaacacttttcaaatatt 25124
Query: 107 ccggttgctttgataccttttttaattctaccctttctcccagtagtaagttaccaacac 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25125 ccggttgctttgataccttttttaattctaccctttctcccagtagtaagttaccaacac 25184
Query: 167 tacgcaaagccttgcctactttgatgacattggtttgtgaggaatctttcttgagggccc 226
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 25185 tacgcaaagccttgcctactttgatgacattggtttgtgaggaatcgtccttgagggccc 25244
Query: 227 tactaatacctacgatacctttttctccctcccttgaaatcatacaaaagttatcattct 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25245 tactaatacctacgatacctttttctccctcccttgaaatcatacaaaagttatcattct 25304
Query: 287 tcaattcaagatatttcattacctctgcattaatctctatgaccccttgaccattatcgg 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25305 tcaattcaagatatttcattacctctgcattaatctctatgaccccttgaccattatcgg 25364
Query: 347 cattgttgtcaattggacgtacaatgaattgttgtggtagtttgaacttggtctttgttt 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25365 cattgttgtcaattggacgtacaatgaattgttgtggtagtttgaacttggtctttgttt 25424
Query: 407 cctcagatgcaccagaagatacaccagttttcttcttactgttagaagagttacttttag 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25425 cctcagatgcaccagaagatacaccagttttcttcttactgttagaagagttacttttag 25484
Query: 467 tagccatgcttcctctttgaatggatcttaaagggcccgtacctatccttctattgttta 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25485 tagccatgcttcctctttgaatggatcttaaagggcccgtacctatccttctattgttta 25544
Query: 527 tttgcttcaggtaatgtctctttaaatgaataagatgagaactgcgatgagatgagatga 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25545 tttgcttcaggtaatgtctctttaaatgaataagatgagaactgcgatgagatgagatga 25604
Query: 587 gcttcgaactttttcctttcaatattgaaaaagttcgaaatgtagaatttgaatacgcag 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25605 gcttcgaactttttcctttcaatattgaaaaagttcgaaatgtagaatttgaatacgcag 25664
Query: 647 atgcattcacaagttataagggaagtccaattcaaaaacagcagttgcaagacactgtga 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25665 atgcattcacaagttataagggaagtccaattcaaaaacagcagttgcaagacactgtga 25724
Query: 707 gcgatgattaggcggccagcagtagctactttatcatgtatgagatcgttgtataaatca 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25725 gcgatgattaggcggccagcagtagctactttatcatgtatgagatcgttgtataaatca 25784
Query: 767 gttacaaacctgactggacttccacaaagaaatcgggttcaagattataaaagaataaag 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25785 gttacaaacctgactggacttccacaaagaaatcgggttcaagattataaaagaataaag 25844
Query: 827 cgtatattgcaggcttttcacacgaattaatacgatgatatgaaggtaccgtctattgac 886
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 25845 cgtatattgcaggctttacacacgaataaatacgatgatatgaaggtaccgtctattgac 25904
Query: 887 caa-taattaagtgtttatatgtgac-aaaccacttaaggt-agtgtgggtgttaattaa 943
||| |||||||||||||||||||||| |||||||||||||| ||||||||||| ||| ||
Sbjct: 25905 caattaattaagtgtttatatgtgacaaaaccacttaaggtaagtgtgggtgtaaataaa 25964
Query: 944 gaagttggtctgcg 957
||||||||||||||
Sbjct: 25965 gaagttggtctgcg 25978
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8400
Number of Sequences: 1807
Number of extensions: 8400
Number of successful extensions: 325
Number of sequences better than 1.0e-20: 1
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)