BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC21ZF03FM1.SCF screened BAC_end
         (964 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1648                                                        1574   0.0  

>3x_Contig1648 
          Length = 16375

 Score = 1574 bits (794), Expect = 0.0
 Identities = 866/882 (98%), Gaps = 6/882 (0%)
 Strand = Plus / Minus

                                                                         
Query: 86    atatcaaggatccaaggaaggataccgtgtccagagaggtgttgagacacgatgagttcc 145
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12022 atatcaaggatccaaggaaggataccgtgtccagagaggtgttgagacacgatgagttcc 11963

                                                                         
Query: 146   aggggaaggttaagttgggtagggtgagagaccacttcatctttaacgtggagagttctg 205
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11962 aggggaaggttaagttgggtagggtgagagaccacttcatctttaacgtggagagttctg 11903

                                                                         
Query: 206   gtgctatgacaccggaagaaatcttcttcaaatcggtcaggatcttgaagaacaaggcgg 265
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11902 gtgctatgacaccggaagaaatcttcttcaaatcggtcaggatcttgaagaacaaggcgg 11843

                                                                         
Query: 266   aatacttgaagaactgtccaatctcacaataagaagccaattcgcatgttctctatttaa 325
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11842 aatacttgaagaactgtccaatctcacaataagaagccaattcgcatgttctctatttaa 11783

                                                                         
Query: 326   tatcatccactcccttccatacacagacaaaccgtgcatcataattccatttctttcatt 385
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11782 tatcatccactcccttccatacacagacaaaccgtgcatcataattccatttctttcatt 11723

                                                                         
Query: 386   ccctgtatcatacgcattaagccactcagtgaacagattaggcacttatatatattcata 445
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11722 ccctgtatcatacgcattaagccactcagtgaacagattaggcacttatatatattcata 11663

                                                                         
Query: 446   tataaagaagccactacatctaaactagtttaatgtacatttgtttttagattcaactgt 505
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11662 tataaagaagccactacatctaaactagtttaatgtacatttgtttttagattcaactgt 11603

                                                                         
Query: 506   gttacaccatcgcatctacatttgtcggttcaaacgtctcctgatcctgcgccattggcc 565
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11602 gttacaccatcgcatctacatttgtcggttcaaacgtctcctgatcctgcgccattggcc 11543

                                                                         
Query: 566   gtgctttggttataagattttcgatcatggcttttggatccacttcgagtatcaagacgt 625
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11542 gtgctttggttataagattttcgatcatggcttttggatccacttcgagtatcaagacgt 11483

                                                                         
Query: 626   taccattatatccgtcactcagatcactctgggctttctgtgtataggtttcgtccgcga 685
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11482 taccattatatccgtcactcagatcactctgggctttctgtgtataggtttcgtccgcga 11423

                                                                         
Query: 686   cttcgtgatctttgaatggtgagatggatagtacagttacgaggaatagccctacttgaa 745
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11422 cttcgtgatctttgaatggtgagatggatagtacagttacgaggaatagccctacttgaa 11363

                                                                         
Query: 746   agaatagaattagcagttggtagaaaaggtacgatgcgttaccctt-aaattactcgagg 804
             |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 11362 agaatagaattagcagttggtagaaaaggtacgatgcgttacccttaaaattactcgagg 11303

                                                                         
Query: 805   gcactcgttcttcaatatactggggtgaccagtgccttctcaattccccctctattatgc 864
             |||||||||| || ||||||||||   |||||||||||||||||||||||||||||||||
Sbjct: 11302 gcactcgttc-tccatatactgggtgaaccagtgccttctcaattccccctctattatgc 11244

                                                                         
Query: 865   ctgttccatgtttaaacggcgattggtagtttttttagat-tgatattccaggc-ttttg 922
             |||||||||| |||||||||||| ||||| |||| ||||| |||||| |||||| |||||
Sbjct: 11243 ctgttccatggttaaacggcgatgggtag-ttttctagatgtgatatcccaggcattttg 11185

                                                       
Query: 923   aagtgctccaatttctt-ttgaagtctattggccatatgatt 963
             ||||||||||| ||||| | ||||||||||||||||||||||
Sbjct: 11184 aagtgctccaaattcttctcgaagtctattggccatatgatt 11143


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6232
Number of Sequences: 1807
Number of extensions: 6232
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 964
length of database: 10,358,551
effective HSP length: 16
effective length of query: 948
effective length of database: 10,329,639
effective search space: 9792497772
effective search space used: 9792497772
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)