BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZF03RM1.SCF screened BAC_end
(974 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1137 1669 0.0
>3x_Contig1137
Length = 5865
Score = 1669 bits (842), Expect = 0.0
Identities = 903/922 (97%), Gaps = 2/922 (0%)
Strand = Plus / Plus
Query: 44 gctttaaaaatttgaaaagttgctttttacttcagatcctttaatcaacactttctgaaa 103
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 2424 gctttaaaaatttgaaaagttgccagttacttcagatcctttaatcaacactttcagaaa 2483
Query: 104 taacatattctacatttaatgtttatataaatctttttgatgtttaaaaccccatcctta 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2484 taacatattctacatttaatgtttatataaatctttttgatgtttaaaaccccatcctta 2543
Query: 164 tgcacgggaaatacgcatatcagtgaggattcgtccgagattgtgttattgctggttgaa 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2544 tgcacgggaaatacgcatatcagtgaggattcgtccgagattgtgttattgctggttgaa 2603
Query: 224 atttatttttaaccatgacctcctcctcataacgtattgtgtctttcattttacacatgt 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2604 atttatttttaaccatgacctcctcctcataacgtattgtgtctttcattttacacatgt 2663
Query: 284 gttatgcagggaatttttggaacctacctttttttccttcttcaagaagcatccttttcc 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2664 gttatgcagggaatttttggaacctacctttttttccttcttcaagaagcatccttttcc 2723
Query: 344 ttcatacgagttgattagggattcatccggcgattaggctaagtccaattgctgaatgat 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2724 ttcatacgagttgattagggattcatccggcgattaggctaagtccaattgctgaatgat 2783
Query: 404 gccttatccatctcgccttcaaatgtatagatatttgtttatagagagagatattgttca 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2784 gccttatccatctcgccttcaaatgtatagatatttgtttatagagagagatattgttca 2843
Query: 464 ccatagtaaagaggaaacttggtactattctaatcccgggtaatctctttttttcgtggt 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2844 ccatagtaaagaggaaacttggtactattctaatcccgggtaatctctttttttcgtggt 2903
Query: 524 gaaaaaaagttttggctcatcgaactaggatttggcaaattattaggtgtcagttcactt 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2904 gaaaaaaagttttggctcatcgaactaggatttggcaaattattaggtgtcagttcactt 2963
Query: 584 ggttcataggtcaatcctagcattagttgttgtttcaattcgttcttgtcctaactcatt 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2964 ggttcataggtcaatcctagcattagttgttgtttcaattcgttcttgtcctaactcatt 3023
Query: 644 tatcagttggcactccaagtatcgatattccagtaaaatatacatatattaacggtacca 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3024 tatcagttggcactccaagtatcgatattccagtaaaatatacatatattaacggtacca 3083
Query: 704 agatgttcagaaagtatgtttggntttaaaagataaactaagaattgacatgcatgataa 763
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 3084 agatgttcagaaagtatgtttgg-tttaaaagataaactaagaattgacatgcatgataa 3142
Query: 764 ttgctgaaatcacacanactcaactcaaatcgaatactaactttatgattattctttctt 823
|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 3143 ttgctgaaatcacacaaactcaactcaaatcgaatactaacttattgattattctttctt 3202
Query: 824 catcctcanattcactagagaagatatccatactcgttc-aatgtcaaatcttctataca 882
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 3203 catcctcagattcactagagaagatatccatactcgttcaaatgtcaaatcttctataca 3262
Query: 883 naggaatttgaaggcaaaattgctcgcgcattatcccagttgggagnaattgatcgatga 942
||||||||||||||||||||||||||||| ||||||| | ||| || ||||||||||
Sbjct: 3263 gaggaatttgaaggcaaaattgctcgcgcagtatcccaagttggaagaagtgatcgatga 3322
Query: 943 aatcatttcgaagaaggctcaa 964
||||||| ||||||||||||||
Sbjct: 3323 aatcattccgaagaaggctcaa 3344
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8867
Number of Sequences: 1807
Number of extensions: 8867
Number of successful extensions: 76
Number of sequences better than 1.0e-20: 1
length of query: 974
length of database: 10,358,551
effective HSP length: 16
effective length of query: 958
effective length of database: 10,329,639
effective search space: 9895794162
effective search space used: 9895794162
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)