BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZF06FM1.SCF screened BAC_end
(977 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig390 1552 0.0
>3x_Contig390
Length = 1860
Score = 1552 bits (783), Expect = 0.0
Identities = 870/893 (97%), Gaps = 5/893 (0%)
Strand = Plus / Minus
Query: 88 tacgggagcgaatttatcgaacactcgtacatgtaccatctcacgagaacagaccacaga 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1657 tacgggagcgaatttatcgaacactcgtacatgtaccatctcacgagaacagaccacaga 1598
Query: 148 cacaatttttcgatttggaacctggtcttactcttagaatctgctggtattcatctttcc 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1597 cacaatttttcgatttggaacctggtcttactcttagaatctgctggtattcatctttcc 1538
Query: 208 caatctatcgaactatctaagctggcattcgttcctcaattgacactatgtgcagtacta 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1537 caatctatcgaactatctaagctggcattcgttcctcaattgacactatgtgcagtacta 1478
Query: 268 ccttatctattgtggaaatcacagacgttcgaaaatttaatgaatgtcctattcgtacaa 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1477 ccttatctattgtggaaatcacagacgttcgaaaatttaatgaatgtcctattcgtacaa 1418
Query: 328 acatacgcattcgttactttcaataaagtatgcacttctcaatatttcatttggtatttg 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1417 acatacgcattcgttactttcaataaagtatgcacttctcaatatttcatttggtatttg 1358
Query: 388 gtattatccccattttatttcgcaaatacaaccattacatggagaaaaggtgtggtctgt 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1357 gtattatccccattttatttcgcaaatacaaccattacatggagaaaaggtgtggtctgt 1298
Query: 448 atatttttatggatattgtctcaagccgtatggctttcacaagcatatctacttgaattc 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1297 atatttttatggatattgtctcaagccgtatggctttcacaagcatatctacttgaattc 1238
Query: 508 aaaggccaaaatgtatttttccccaacttattctttggcaatatagtgtttttcctcatc 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1237 aaaggccaaaatgtatttttccccaacttattctttggcaatatagtgtttttcctcatc 1178
Query: 568 aacgtctatctactcggtgtctttatcactgacatcaaatccagaacgtcattccaagac 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1177 aacgtctatctactcggtgtctttatcactgacatcaaatccagaacgtcattccaagac 1118
Query: 628 aatcaacataagaagaatatataattttaacttagcatatactgtagcgtactgtgacat 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1117 aatcaacataagaagaatatataattttaacttagcatatactgtagcgtactgtgacat 1058
Query: 688 tttcaaagccacgatcgaagtcctgacgagtattttgatgttccattccgttcatccaat 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1057 tttcaaagccacgatcgaagtcctgacgagtattttgatgttccattccgttcatccaat 998
Query: 748 ttcatatccgttgtcagattcactcgctgctggtttcttcatactgattattgaaataga 807
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 997 ttcatatccgttgtcagattcactcgctgctgttttcttcatactgattattgaaataga 938
Query: 808 aatttgaaaaaaaaaagtatntcaag-tttgaatcttacaagtgaaatatgagctcatcg 866
| || |||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 937 atttgaaaaaaaaaaagtat-tcaagttttgaatcttacaagtgaaatatgagctcatcg 879
Query: 867 acatctactagaagaagtacatttcaagcanaggcttgtcagtatg-aattaggccctcc 925
||||||||||||||||||||||| ||||| |||| |||||| || |||||| ||||||
Sbjct: 878 acatctactagaagaagtacattcaaagcagaggc-tgtcagattgaaattagcccctcc 820
Query: 926 agctagcgtgttaggaaaccc-cttttactaacagnagtacataatgtcacgt 977
||||||||||| | |||||| |||| |||||||| ||||||||||||||
Sbjct: 819 agctagcgtgtaggaaaacccactttaactaacagagtaacataatgtcacgt 767
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8365
Number of Sequences: 1807
Number of extensions: 8365
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 977
length of database: 10,358,551
effective HSP length: 16
effective length of query: 961
effective length of database: 10,329,639
effective search space: 9926783079
effective search space used: 9926783079
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)