BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZF06RM1.SCF screened BAC_end
(984 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1200 1729 0.0
>3x_Contig1200
Length = 5130
Score = 1729 bits (872), Expect = 0.0
Identities = 926/941 (98%), Gaps = 3/941 (0%)
Strand = Plus / Plus
Query: 44 gctttatgtggatacttttgcct-cgacgtttctattatttccatttacttagataagtc 102
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 2731 gctttatgtggatacttttgccaacgacgtttctattatttccatttacttagataagtc 2790
Query: 103 ccaacaagatcatgacatcttgaaagaattgggattgtcgttgttacaagtggaaagaga 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2791 ccaacaagatcatgacatcttgaaagaattgggattgtcgttgttacaagtggaaagaga 2850
Query: 163 agcctctttattatatgcaattcctcaaaactcgttcaaagacttgtatcaatccttaca 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 2851 agcctctttattatatgcaattcctcaaaactcgttcaaagacttgtatcaatccagaca 2910
Query: 223 attctctccacaagaatccatctatgcgcatatcggttccatcttcatcaaccatttcat 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2911 attctctccacaagaatccatctatgcgcatatcggttccatcttcatcaaccatttcat 2970
Query: 283 taaccgtcttggttccagttacgattctttaatcaggcaattaaacgtaaaaccagatga 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2971 taaccgtcttggttccagttacgattctttaatcaggcaattaaacgtaaaaccagatga 3030
Query: 343 tactttgttgaacgaactcttagctaatttgaagcgtaagttgagaactgaaacttacac 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3031 tactttgttgaacgaactcttagctaatttgaagcgtaagttgagaactgaaacttacac 3090
Query: 403 tcaacaaatgatcatacacgtccttcacaagtacaaggaaattgtatcaaagttatacaa 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3091 tcaacaaatgatcatacacgtccttcacaagtacaaggaaattgtatcaaagttatacaa 3150
Query: 463 atcgtttgctcaagtccattatcctacaaagacttctgctactgggtctggtaaccaaaa 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3151 atcgtttgctcaagtccattatcctacaaagacttctgctactgggtctggtaaccaaaa 3210
Query: 523 attgcaaatgactttgtcatatcaacgtctatctcaattagaaccattccaaagtgagga 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3211 attgcaaatgactttgtcatatcaacgtctatctcaattagaaccattccaaagtgagga 3270
Query: 583 agaattcaacttgtatttgaacaaggtcttccccaacgattctccagacctattgatctt 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3271 agaattcaacttgtatttgaacaaggtcttccccaacgattctccagacctattgatctt 3330
Query: 643 gagaaccttaaacttgttcaacaagtctatcttgaagactaatttcttcatcaccagaaa 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3331 gagaaccttaaacttgttcaacaagtctatcttgaagactaatttcttcatcaccagaaa 3390
Query: 703 agtggccatttctttcaagttggaccctgctttaattttaccaaagagtgaatacccaga 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3391 agtggccatttctttcaagttggaccctgctttaattttaccaaagagtgaatacccaga 3450
Query: 763 aactccatacggtatcttctttgtcgtcggcaacacgttcaaagctttccatatcagatt 822
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 3451 aactccatacggtatcttctttgtcgtcggcaacacgttcaaggctttccatatcagatt 3510
Query: 823 cagagacatctnccgtggtggtattagaatcgtagtttcaagatcccaagatgtttatga 882
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3511 cagagacatctcccgtggtggtattagaatcgtagtttcaagatcccaagatgtttatga 3570
Query: 883 caaaaactncaagagtgttatcgatgagaattaccgtttggcttctacac-acagaagta 941
|||||||| ||||||||||||||||||||||||| |||||||||| |||| ||||||| |
Sbjct: 3571 caaaaactccaagagtgttatcgatgagaattacggtttggcttcaacacaacagaagaa 3630
Query: 942 gaacagggatattncagaaggttgggtcccagggtgttatt 982
||||| ||||||| ||||||| ||||||| |||||||||||
Sbjct: 3631 gaacaaggatattccagaagg-tgggtccaagggtgttatt 3670
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8055
Number of Sequences: 1807
Number of extensions: 8055
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 984
length of database: 10,358,551
effective HSP length: 16
effective length of query: 968
effective length of database: 10,329,639
effective search space: 9999090552
effective search space used: 9999090552
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)