BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZF07RM1.SCF screened BAC_end
(882 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1233 1019 0.0
3x_Contig1442 549 e-156
>3x_Contig1233
Length = 4604
Score = 1019 bits (514), Expect = 0.0
Identities = 544/553 (98%), Gaps = 1/553 (0%)
Strand = Plus / Minus
Query: 331 ctgcaacaatattagaatgctttaagatgacaccctttggatcaccagtggaaccggaag 390
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 4585 ctgcaacaatattagaatgctttaagatgacaccctttggatcaccagtgtttttggaag 4526
Query: 391 tgtacatgatagctgacaaatcttcaggggctggaggatgtggttcaatttcatctctag 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4525 tgtacatgatagctgacaaatcttcaggggctggaggatgtggttcaatttcatctctag 4466
Query: 451 ccttcttacccaattcgatgacttcatccatggaaagaatcttaatgtctggtctaacct 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4465 ccttcttacccaattcgatgacttcatccatggaaagaatcttaatgtctggtctaacct 4406
Query: 511 ctttaatcttagccaatgcgtctgcagcgtccttgtaaagcttaccctcatcccttttat 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4405 ctttaatcttagccaatgcgtctgcagcgtccttgtaaagcttaccctcatcccttttat 4346
Query: 571 cctctgggttcaactcttcagaaatgattagatatntcaagtttgtagcctcttgtacag 630
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 4345 cctctgggttcaactcttcagaaatgattagatatttcaagtttgtagcctcttgtacag 4286
Query: 631 cgttatgcaacctacacaacaatgcattgtcaacaaacatacccttagaagcggtttgaa 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4285 cgttatgcaacctacacaacaatgcattgtcaacaaacatacccttagaagcggtttgaa 4226
Query: 691 ccatggaatggattaaacccttttcacccaaagtatcatatgcagtcaccacaggaatgg 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4225 ccatggaatggattaaacccttttcacccaaagtatcatatgcagtcaccacaggaatgg 4166
Query: 751 cctgagactgcgtagccaaaaatgtcttcatccatctatgagatgttgatgcaaagatgt 810
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4165 cctgagactgcgtacgcaaaaatgtcttcatccatctatgagatgttgatgcaaagatgt 4106
Query: 811 gcaatttatcctcagaagccggttgtaaccccaatttcactaacccacgaccat-atcat 869
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 4105 gcaatttatcctcagaagccggttgtaaccccaatttcactaacccacgaccataatcat 4046
Query: 870 gaactaactcatt 882
|||||||||||||
Sbjct: 4045 gaactaactcatt 4033
>3x_Contig1442
Length = 8270
Score = 549 bits (277), Expect = e-156
Identities = 298/301 (99%), Gaps = 3/301 (0%)
Strand = Plus / Plus
Query: 43 aagcttgttaatttgtgccaagatcccctttctaacactttcccaaacagcggcaacacc 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7971 aagcttgttaatttgtgccaagatcccctttctaacactttcccaaacagcggcaacacc 8030
Query: 103 aaccatgatagttggttggaactccttgatgtcaccttggcagttgcgaacagatgcatc 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8031 aaccatgatagttggttggaactccttgatgtcaccttggcagttgcgaacagatgcatc 8090
Query: 163 ggtcaacgtcttaacgttcgcataaccaagtgtagcgccccagtaaaaagtgtatcaatt 222
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 8091 ggtcaacgtcttaacgttcgcataaccaagtgtagcgccccagtaaaaagtg-atcaatt 8149
Query: 223 cgaaagccaactcaaaaatatgagcca-ggggcaaaaatgcaatgacacgatctgt-gtg 280
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 8150 cgaaagccaactcaaaaatatgagccagggggcaaaaatgcaatgacacgatctgtagtg 8209
Query: 281 acaaacgtgttctggtctgttactaataatggaagagataccgcctagacctgcaacaat 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8210 acaaacgtgttctggtctgttactaataatggaagagataccgcctagacctgcaacaat 8269
Query: 341 a 341
|
Sbjct: 8270 a 8270
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5312
Number of Sequences: 1807
Number of extensions: 5312
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 2
length of query: 882
length of database: 10,358,551
effective HSP length: 16
effective length of query: 866
effective length of database: 10,329,639
effective search space: 8945467374
effective search space used: 8945467374
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)