BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZF08RM1.SCF screened BAC_end
(959 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig463 1179 0.0
>3x_Contig463
Length = 2578
Score = 1179 bits (595), Expect = 0.0
Identities = 613/619 (99%)
Strand = Plus / Minus
Query: 45 gcttaccccttaacttgtactcttgttcaatgcgttgattgtatctaataaaatcacttt 104
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 645 gcttaccccttaacttgtactcctgttcaatgcgttgattgtatctaataaaatcacttt 586
Query: 105 ttccgttgtcatctttatgtcgtcctgtcttattgttgtagagttgactaatataaaatt 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 ttccgttgtcatctttatgtcgtcctgtcttattgttgtagagttgactaatataaaatt 526
Query: 165 tattagagcttaaactctccttaaaggcttcttcattagtattacattgttctttcttta 224
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 525 tattagagcttaaactctccttaaaggcttcttcattagtattacattgttcgaccatta 466
Query: 225 tctcagctaagatagatgaatcgatcgagtccgtcccattcgattcaatgtccgatattt 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 tctcagctaagatagatgaatcgatcgagtccgtcccattcgattcaatgtccgatattt 406
Query: 285 ctgttgtggtatctgcattagagactacctcttcagaggttccgttaccataggtatcca 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ctgttgtggtatctgcattagagactacctcttcagaggttccgttaccataggtatcca 346
Query: 345 cgttataatgtttgggaaatagaccaccaccggggtgatcatcatccatctttttataag 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 cgttataatgtttgggaaatagaccaccaccggggtgatcatcatccatctttttataag 286
Query: 405 tcttgggttctcactttccgttcttggcgatggcttctcttgttaacactattggataaa 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 tcttgggttctcactttccgttcttggcgatggcttctcttgttaacactattggataaa 226
Query: 465 acattatgttatgactttttagtttaagaaagtctatttgatttctatgactataaatat 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 acattatgttatgactttttagtttaagaaagtctatttgatttctatgactataaatat 166
Query: 525 gaaactattacgaataaaaatgacgttaggtgaacagtaaaagagtaattaaaaacgtgt 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 gaaactattacgaataaaaatgacgttaggtgaacagtaaaagagtaattaaaaacgtgt 106
Query: 585 ggagagactcatgataatcttccagtattatcataatgcaaaagtatctatattatttgt 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 ggagagactcatgataatcttccagtattatcataatgcaaaagtatctatattatttgt 46
Query: 645 gtgaaaagatttcagtaag 663
||||||||||| |||||||
Sbjct: 45 gtgaaaagattccagtaag 27
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8787
Number of Sequences: 1807
Number of extensions: 8787
Number of successful extensions: 138
Number of sequences better than 1.0e-20: 1
length of query: 959
length of database: 10,358,551
effective HSP length: 16
effective length of query: 943
effective length of database: 10,329,639
effective search space: 9740849577
effective search space used: 9740849577
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)