BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZF10FM1.SCF screened BAC_end
(881 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig806 1540 0.0
>3x_Contig806
Length = 2480
Score = 1540 bits (777), Expect = 0.0
Identities = 792/796 (99%), Gaps = 1/796 (0%)
Strand = Plus / Minus
Query: 86 acgaattgagaaccaagtccaaggaccaattggaacaacaattggttgaattgaagaagg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1593 acgaattgagaaccaagtccaaggaccaattggaacaacaattggttgaattgaagaagg 1534
Query: 146 aattggccgaattgaaggttcaaaaattgtccagaccatctttgccaaaaatcaacactg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1533 aattggccgaattgaaggttcaaaaattgtccagaccatctttgccaaaaatcaacactg 1474
Query: 206 tcagaaagaacattgctcgtgtcttgactgttatctctcaaaaccaaagacaagctgtca 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1473 tcagaaagaacattgctcgtgtcttgactgttatctctcaaaaccaaagacaagctgtca 1414
Query: 266 gagaattgtacaagggtaagaagtaccaaccaaaggacttgagagccaagaagaccagag 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1413 gagaattgtacaagggtaagaagtaccaaccaaaggacttgagagccaagaagaccagag 1354
Query: 326 ctttgagaagagctttgaccaaattcgaagcttcccaagttactgaaaagcaaagaaaga 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1353 ctttgagaagagctttgaccaaattcgaagcttcccaagttactgaaaagcaaagaaaga 1294
Query: 386 agcaaattgctttcccacaaagaaagtatgctatcaaggcttaagaaaccgttcttccta 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1293 agcaaattgctttcccacaaagaaagtatgctatcaaggcttaagaaaccgttcttccta 1234
Query: 446 ttacattattaagaacgttttttcatgttaaattagtttacatctttctacataatctct 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1233 ttacattattaagaacgttttttcatgttaaattagtttacatctttctacataatctct 1174
Query: 506 aacatcattgttgtatttgagtacacgcattttgcaaaatagacacagggtttctgttta 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1173 aacatcattgttgtatttgagtacacgcattttgcaaaatagacacagggtttctgttta 1114
Query: 566 atctcatgttagaatgatcctctgcatggaatcgaacgccacttgctgtgtcactttaag 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1113 atctcatgttagaatgatcctctgcatggaatcgaacgccacttgctgtgtcactttaag 1054
Query: 626 attatattgacgaaattttttacctacatacttattttagtggggtatgctattctttct 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1053 attatattgacgaaattttttacctacatacttattttagtggggtatgctattctttct 994
Query: 686 tcgaacgcttagattttctgaattccaagattttctccttcaactccacgttgggtataa 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 993 tcgaacgcttagattttctgaattccaagattttctccttcaactccacgttgggtataa 934
Query: 746 cctcctcaagtttcaatggtgatctgttgaaggggtctgttgagtcgcttagcanatgtg 805
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 933 cctcctcaagtttcaatggtgatctgttgaaggggtctgttgagtcgcttagcaaatgtg 874
Query: 806 ctttaatggtgcttctatcaatggtaacttttgaagtagggaggatgactgggtctttca 865
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 873 ctttaatggtgcttctatcaatggtaactttggaagtagggagaatgactgggtctttca 814
Query: 866 -gatagtatacattaa 880
|||||||||||||||
Sbjct: 813 tgatagtatacattaa 798
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6901
Number of Sequences: 1807
Number of extensions: 6901
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 881
length of database: 10,358,551
effective HSP length: 16
effective length of query: 865
effective length of database: 10,329,639
effective search space: 8935137735
effective search space used: 8935137735
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)