BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZF10RM1.SCF screened BAC_end
(912 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1676 1382 0.0
>3x_Contig1676
Length = 15800
Score = 1382 bits (697), Expect = 0.0
Identities = 800/823 (97%), Gaps = 9/823 (1%)
Strand = Plus / Minus
Query: 43 agctttcttcagagccttttcatctttgacattttgagcctttctttctaaattcat-at 101
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct: 5340 agctttcttcagagccttttcagctttgacattttgagcctttctttctaaattcatcat 5281
Query: 102 atccttcc-cacagtgtttctttcccacacaacgtgttctctcaaatgaagggaaagctc 160
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5280 atccttccacacagtgtttctttcccacacaacgtgttctctcaaatgaagggaaagctc 5221
Query: 161 tctttcagcttcttggaagttaaagacctcatgttgagggtccattaatccaatagcttt 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5220 tctttcagcttcttggaagttaaagacctcatgttgagggtccattaatccaatagcttt 5161
Query: 221 tgcatacatgactatgacttcattgatgtcattagataaattctcaatggtgtgttcatt 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5160 tgcatacatgactatgacttcattgatgtcattagataaattctcaatggtgtgttcatt 5101
Query: 281 gaacacatgcgatttctttgataaactctttaaataatcggtcttgatattactatccaa 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5100 gaacacatgcgatttctttgataaactctttaaataatcggtcttgatattactatccaa 5041
Query: 341 agatttatcgaattttttgcagatcttggcaaaaccagtttgattcaactcgataaaaga 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5040 agatttatcgaattttttgcagatcttggcaaaaccagtttgattcaactcgataaaaga 4981
Query: 401 ttttaattctgaaagttgagtgaaacaggcaacgattctcttcttcaaagtaatctgttg 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4980 ttttaattctgaaagttgagtgaaacaggcaacgattctcttcttcaaagtaatctgttg 4921
Query: 461 ttccataataggatcagtagtggtgaaatcagttaccctggacagcgttggaagtatttc 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4920 ttccataataggatcagtagtggtgaaatcagttaccctggacagcgttggaagtatttc 4861
Query: 521 actggtaatggaatgcatgagcctagatcctactgaaccagttcttgctcttcgagcctg 580
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 4860 actggtaatggaatgcatgagcctagatcctactgaaccagttcgtattcttcgagcctg 4801
Query: 581 gatctgcttattctgaccatcagactgctcttggtttccaatgganaacccgtcctcgtc 640
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 4800 gatctgcttattctgaccatcagactgctcttggtttccaatggaaaacccgtcctcgtc 4741
Query: 641 atcgtcttcctcagaataaagatccatttctggctgtgaattgtattcagagatagaaga 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4740 atcgtcttcctcagaataaagatccatttctggctgtgaattgtattcagagatagaaga 4681
Query: 701 tgatcgccttgttccctgtctgttcagatcaccagtgcctggtaatatgtatcgatctgt 760
||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||
Sbjct: 4680 tgatcgccttgttccctgtctgttcagatcaccagtg-cttgtattatgtatcgatctgt 4622
Query: 761 tcatcagntcattctgggaacgtaatcaacgtcttcatacacttcaaaagtaattggccc 820
||||||| ||||||| |||||||| || ||||||||||||||||| | ||||||||| ||
Sbjct: 4621 tcatcagttcattct-ggaacgtagtc-acgtcttcatacacttc-agagtaattgg-cc 4566
Query: 821 aaaatcgacgtctttctgcatggtttaaaaacgaatcgatttt 863
|| ||||||||| | ||||||||| | ||||||| ||||||||
Sbjct: 4565 aagatcgacgtc-tcctgcatggtat-aaaacgagtcgatttt 4525
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7626
Number of Sequences: 1807
Number of extensions: 7626
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)