BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZG01FM1.SCF screened BAC_end
(950 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1521 1622 0.0
>3x_Contig1521
Length = 8057
Score = 1622 bits (818), Expect = 0.0
Identities = 851/862 (98%), Gaps = 1/862 (0%)
Strand = Plus / Plus
Query: 85 acaatgatgatataactcaaaagttgatattgctgacaggtaagccgaaaaaggaaatga 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1913 acaatgatgatataactcaaaagttgatattgctgacaggtaagccgaaaaaggaaatga 1972
Query: 145 gggttatcttcgaggaagagcttactaaattcaaaccgttgagtactaggattgaagcaa 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1973 gggttatcttcgaggaagagcttactaaattcaaaccgttgagtactaggattgaagcaa 2032
Query: 205 caatattcaaacaaaacaatttgattaacgacataaaaatcaagttggacgaagttttca 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2033 caatattcaaacaaaacaatttgattaacgacataaaaatcaagttggacgaagttttca 2092
Query: 265 aacttattggagtacaagataagacccctgaacaagaaaatacagtgaaagaaagacaga 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2093 aacttattggagtacaagataagacccctgaacaagaaaatacagtgaaagaaagacaga 2152
Query: 325 cctttttcgataaggttgaaaaggcttttaaccaattcgttatatttagtaccgatttgc 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2153 cctttttcgataaggttgaaaaggcttttaaccaattcgttatatttagtaccgatttgc 2212
Query: 385 cgaagggtttaaacttttacgacactttgctcaagatgactagagaattaagccacgcat 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2213 cgaagggtttaaacttttacgacactttgctcaagatgactagagaattaagccacgcat 2272
Query: 445 ccacccctggacaatctgtaaacttgatagattccaacacattgccacctaacttaccac 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2273 ccacccctggacaatctgtaaacttgatagattccaacacattgccacctaacttaccac 2332
Query: 505 aaaaatctacacaatctacaacacttacaaagagtttcgcaaatttaaacttatgcaatg 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2333 aaaaatctacacaatctacaacacttacaaagagtttcgcaaatttaaacttatgcaatg 2392
Query: 565 atgttaatgactcggtaactcaaagtcctgcaaatctcgctaacactaataacaccggag 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2393 atgttaatgactcggtaactcaaagtcctgcaaatctcgctaacactaataacaccggag 2452
Query: 625 tgaatccaggtccgcctcaattaccaccgaaacctctttctaccggtatcagtgggcttg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2453 tgaatccaggtccgcctcaattaccaccgaaacctctttctaccggtatcagtgggcttg 2512
Query: 685 tcagcgatcaaaagctgcagaatggaccgacatccttttataacaatccatctgtctttg 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2513 tcagcgatcaaaagctgcagaatggaccgacatccttttataacaatccatctgtctttg 2572
Query: 745 atgaaaatctctattccaaattcagtaaatagtgtttgtggttatatatatcttgaattt 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2573 atgaaaatctctattccaaattcagtaaatagtgtttgtggttatatatatcttgaattt 2632
Query: 805 aatgctaatgctaatttctcttcttctggtttgggtttttccactgtactattttnagtg 864
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 2633 aatgctaatgctaatttctcttcttctggtttggttttttccactgtactattttaggtg 2692
Query: 865 atggaacataccatatattttcaaatccaaatnccgttnctgtggattttgactatactc 924
||||||||||||||||||||||| ||||||| ||||| |||| ||||||||||||||||
Sbjct: 2693 atggaacataccatatattttcagatccaaaatccgtttctgt-gattttgactatactc 2751
Query: 925 accaagccgncctccttcaccg 946
||||||||| | ||| ||||||
Sbjct: 2752 accaagccgccatccatcaccg 2773
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7130
Number of Sequences: 1807
Number of extensions: 7130
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 950
length of database: 10,358,551
effective HSP length: 16
effective length of query: 934
effective length of database: 10,329,639
effective search space: 9647882826
effective search space used: 9647882826
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)