BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZG01RM1.SCF screened BAC_end
(955 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig833 1568 0.0
>3x_Contig833
Length = 3148
Score = 1568 bits (791), Expect = 0.0
Identities = 882/905 (97%), Gaps = 7/905 (0%)
Strand = Plus / Plus
Query: 45 gctttggaattctgaaccgattatctgaggattgaataaaatctctggcgctctgaattt 104
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 893 gctttggaattctgaaccgattaactgaggattgaataaaatctctggcgctctgaattt 952
Query: 105 ctcattatcaagttcaatctgtttcccatctggcagtctgaacattgtttgttttccgtg 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 953 ctcattatcaagttcaatctgtttcccatctggcagtctgaacattgtttgttttccgtg 1012
Query: 165 cattgtgtagtttttctcttcttctttcggatccaatgctatatagcacgctttctcttt 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1013 cattgtgtagtttttctcttcttctttcggatccaatgctatatagcacgctttctcttt 1072
Query: 225 gatgattcgaacgatctctctttcgctactcgaaagcaaggaaaccccagtggactttcg 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1073 gatgattcgaacgatctctctttcgctactcgaaagcaaggaaaccccagtggactttcg 1132
Query: 285 tataag-aacttgcaaaag-ttctgatatatcacgaccagctatatcaatccttcgtata 342
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1133 tataagcaacttgcaaaagcttctgatatatcacgaccagctatatcaatccttcgtata 1192
Query: 343 gctgatggtaatgtgtaaccatcgtaaactggaactgcgtgtgaacaaccatcaccggaa 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1193 gctgatggtaatgtgtaaccatcgtaaactggaactgcgtgtgaacaaccatcaccggaa 1252
Query: 403 tccaatacgcatcctgttgttcgcccactggcgtatagcgaaagcactgcctgaatcgat 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1253 tccaatacgcatcctgttgttcgcccactggcgtatagcgaaagcactgcctgaatcgat 1312
Query: 463 acatataccgcaggtacactaaaagtttcgaataataactcgcacatctgttctctattc 522
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1313 acatataccgcagaacaattaaaagtttcgaataataactcgcacatctgttctctattc 1372
Query: 523 tttttgggattcaatggtgcctcagtgaccaacaccggatgatcttgcaaactgctcagc 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1373 tttttgggattcaatggtgcctcagtgaccaacaccggatgatcttgcaaactgctcagc 1432
Query: 583 tgtaatcctttttcgaaaacatgcccccatagctgctccaatgcattccaatctgtcaca 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1433 tgtaatcctttttcgaaaacatgcccccatagctgctccaatgcattccaatctgtcaca 1492
Query: 643 acgccatgttctaaaggatggcgtagcttcaaaagaccccgtatttcctgtgcttggttt 702
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1493 acgccatgttctaaaggatggcgta-cttcaaaagaccccgtatttcctgtgcttggttt 1551
Query: 703 ccaacgaaagtattcccatcgaatcttccagccataactttactatatttangtatcccc 762
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1552 ccaacgaaagtattcccatcgaatcttccagccataactttactatatttaggtatcccc 1611
Query: 763 accanagaaatgttcat-acattttagtttatcttcacctccaaaccccgnctttattag 821
|||| || ||||||||| |||||| |||||||||||||||||||||||| |||||||||
Sbjct: 1612 accaaag-aatgttcataacatttaggtttatcttcacctccaaaccccgcctttattag 1670
Query: 822 cccagacccattgtctagaactatanngttgattgaaacatatctcatctttggaatnca 881
||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||
Sbjct: 1671 cccagacccattgtctagaactata-ggttgattgaacaatatctcatctttggaatcca 1729
Query: 882 tcaccgntatccctatgtaatgctctgaatgtcatgatcttttcgcg-tgttactgttta 940
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1730 tcaccgttatccctatgtaatgctctgaatgtcatgatcttttcgcgttgttactgttta 1789
Query: 941 caatt 945
|||||
Sbjct: 1790 caatt 1794
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6249
Number of Sequences: 1807
Number of extensions: 6249
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 955
length of database: 10,358,551
effective HSP length: 16
effective length of query: 939
effective length of database: 10,329,639
effective search space: 9699531021
effective search space used: 9699531021
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)