BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZG03FM1.SCF screened BAC_end
(973 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1594 1637 0.0
>3x_Contig1594
Length = 9813
Score = 1637 bits (826), Expect = 0.0
Identities = 871/883 (98%), Gaps = 3/883 (0%)
Strand = Plus / Plus
Query: 80 gcttccaaatcattatttcaatgtttaatgggatcatttttgcgattccattattcaatg 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5199 gcttccaaatcattatttcaatgtttaatgggatcatttttgcgattccattattcaatg 5258
Query: 140 tgatttacctctctgttttcgtaatagcacctttcactagccaagcagctgagcatatta 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5259 tgatttacctctctgttttcgtaatagcacctttcactagccaagcagctgagcatatta 5318
Query: 200 ccatcaagaatgactcagaacaaacaattgcctttaaggtgaagaccacagctcctaagg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5319 ccatcaagaatgactcagaacaaacaattgcctttaaggtgaagaccacagctcctaagg 5378
Query: 260 tatactgtgtaagacctaatgccgctttggtgccagccggtgaaagcgttgatgttcaag 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5379 tatactgtgtaagacctaatgccgctttggtgccagccggtgaaagcgttgatgttcaag 5438
Query: 320 tgattcttttaggattgaaggaagaacctacaccagatttcaaatgtaaagataaattct 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5439 tgattcttttaggattgaaggaagaacctacaccagatttcaaatgtaaagataaattct 5498
Query: 380 tggttatagctttgccagctccttacgatttaggtgaactgagtgtggccgaagcttggc 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5499 tggttatagctttgccagctccttacgatttaggtgaactgagtgtggccgaagcttggc 5558
Query: 440 ctcaattggaagcagagttcaagaacaagggcctgtcaaagaagattaaggtaaattatc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5559 ctcaattggaagcagagttcaagaacaagggcctgtcaaagaagattaaggtaaattatc 5618
Query: 500 aactagatgctgaaccaagagtcgtggaaaatctagaaactgataacgtgcaaactgaga 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5619 aactagatgctgaaccaagagtcgtggaaaatctagaaactgataacgtgcaaactgaga 5678
Query: 560 ctgtcattccttcagccaaggaaactattgctagtggttcgaaagctacagaagagtccg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5679 ctgtcattccttcagccaaggaaactattgctagtggttcgaaagctacagaagagtccg 5738
Query: 620 ctagtgaaccggtacaaaagaaatctgtcccggttgcatctgccaatactgacctggata 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5739 ctagtgaaccggtacaaaagaaatctgtcccggttgcatctgccaatactgacctggata 5798
Query: 680 ctgaaaagccaaaagttgtggaaagtgaaccaaagctcgatgaaaaggtcaaatctgata 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5799 ctgaaaagccaaaagttgtggaaagtgaaccaaagctcgatgaaaaggtcaaatctgata 5858
Query: 740 ccagcgctaacactgaaattattgcagaacccgctagtacgtcgaatattgcaccggccg 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5859 ccagcgctaacactgaaattattgcagaacccgctagtacgtcgaatattgcaccggccg 5918
Query: 800 tggtcatttggatcgttataggtttcttactttggtatggggtatcttaggatacattct 859
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 5919 tggtcatttggatcgttataggtttcttactttggtattggttatcttaggatacattct 5978
Query: 860 gattaagtgaggggactatcaaccatcgtatttatatatgacaacata-ttctcgacttt 918
||||||||||||| |||||||||||||||| | ||||||||||||||| |||||||||||
Sbjct: 5979 gattaagtgagggaactatcaaccatcgta-taatatatgacaacatatttctcgacttt 6037
Query: 919 gatagaaatg-tgntatgaaatatatncgaattncttttctta 960
|||||||||| || |||||| ||||| || ||| |||||||||
Sbjct: 6038 gatagaaatgttgttatgaattatattcgtatttcttttctta 6080
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6260
Number of Sequences: 1807
Number of extensions: 6260
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 973
length of database: 10,358,551
effective HSP length: 16
effective length of query: 957
effective length of database: 10,329,639
effective search space: 9885464523
effective search space used: 9885464523
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)