BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZG03RM1.SCF screened BAC_end
(984 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1578 1770 0.0
>3x_Contig1578
Length = 13178
Score = 1770 bits (893), Expect = 0.0
Identities = 931/942 (98%), Gaps = 2/942 (0%)
Strand = Plus / Minus
Query: 44 gcttctagccctttcttcatacttcaattaaacttattcaattgcaaaaataccattaaa 103
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 11878 gcttctagccctttcttcatactacaattaaacttattcaattgcaaaaataccattaaa 11819
Query: 104 atgggggtgtgcagaccctagtctcgcagacatcaacgtacccatcttatgtccttttac 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11818 atgggggtgtgcagaccctagtctcgcagacatcaacgtacccatcttatgtccttttac 11759
Query: 164 tgaattctcgaatgcatgaataaaactaaaaaataaaggcttggcttttagatgttatta 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 11758 tgaattctcgaatgcatgaataaaactaaaaaataaaggcttggcttttagatgttaata 11699
Query: 224 atcaatcaaacaggctcagaacagtccggattaagccatctccccgtagcatccatggta 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11698 atcaatcaaacaggctcagaacagtccggattaagccatctccccgtagcatccatggta 11639
Query: 284 cagcataaactttgatttgttcgagctttaagggagtataactcacgtagaacaagtaag 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11638 cagcataaactttgatttgttcgagctttaagggagtataactcacgtagaacaagtaag 11579
Query: 344 agaactcagtgtgctggaaaccttttttattcataattggaatctttaacccaattcgat 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11578 agaactcagtgtgctggaaaccttttttattcataattggaatctttaacccaattcgat 11519
Query: 404 tacttagattactttaaatcacacccagttttgacctttctgcataccgatgccattttt 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11518 tacttagattactttaaatcacacccagttttgacctttctgcataccgatgccattttt 11459
Query: 464 tatctgaaactgtcaaacaaacatacaaacgttctgaaaaagaaaaaggattcaagaagg 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11458 tatctgaaactgtcaaacaaacatacaaacgttctgaaaaagaaaaaggattcaagaagg 11399
Query: 524 ttaaaaaaaagaaaaagctgtgggtatctattggatgagcgaagcagtaatacgtcgctc 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11398 ttaaaaaaaagaaaaagctgtgggtatctattggatgagcgaagcagtaatacgtcgctc 11339
Query: 584 ttacaattcatttgtaacgtgagaggaaacattatgtcttacatcagggccaagctagcc 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11338 ttacaattcatttgtaacgtgagaggaaacattatgtcttacatcagggccaagctagcc 11279
Query: 644 tcgatgtaactttggctttaaaatcgagcttttgcgttgagctgaatgagcaaacataaa 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11278 tcgatgtaactttggctttaaaatcgagcttttgcgttgagctgaatgagcaaacataaa 11219
Query: 704 atgattacaattatcggatcaaactagaacgaaaattgacaaagtctcaaaagggaccct 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11218 atgattacaattatcggatcaaactagaacgaaaattgacaaagtctcaaaagggaccct 11159
Query: 764 aatcaatgtagtcaactagaatgtataaagctttgctatcatttcttacgttcacgggat 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11158 aatcaatgtagtcaactagaatgtataaagctttgctatcatttcttacgttcacgggat 11099
Query: 824 gttctcagtcaatctcccctgtatctacaatatatatctacaatgttcatactattttta 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11098 gttctcagtcaatctcccctgtatctacaatatatatctacaatgttcatactattttta 11039
Query: 884 tccgctattttgcgaactgac-anacatgcattatttncatgtatgcacaattagacgct 942
|||||||||| |||||||| | ||||||||||||| ||||||||||||||||||||||
Sbjct: 11038 tccgctatttgcggaactgacaaaacatgcattatttccatgtatgcacaattagacgct 10979
Query: 943 ttcgtctnctgtattttcgaccctc-ttttttttgaaatttt 983
| ||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 10978 tccgtctcctgtattttcgaccctctttttttttgaaatttt 10937
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8139
Number of Sequences: 1807
Number of extensions: 8139
Number of successful extensions: 71
Number of sequences better than 1.0e-20: 1
length of query: 984
length of database: 10,358,551
effective HSP length: 16
effective length of query: 968
effective length of database: 10,329,639
effective search space: 9999090552
effective search space used: 9999090552
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)