BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZG06RM1.SCF screened BAC_end
(985 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1220 904 0.0
3x_Contig1604 535 e-152
>3x_Contig1220
Length = 4729
Score = 904 bits (456), Expect = 0.0
Identities = 461/463 (99%)
Strand = Plus / Plus
Query: 49 gtggttcggtggtggtgctgatttaactccttcttatttgtacgaggaagacgctaaatt 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4267 gtggttcggtggtggtgctgatttaactccttcttatttgtacgaggaagacgctaaatt 4326
Query: 109 gttccatcaattgcacaaggatgctttggacaaaacggacgttgccttgtacccaaaata 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4327 gttccatcaattgcacaaggatgctttggacaaaacggacgttgccttgtacccaaaata 4386
Query: 169 caagaaatggtgcgatgagtatttctatatcaaacacagagaagaaaccagaggtatcgg 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4387 caagaaatggtgcgatgagtatttctatatcaaacacagagaagaaaccagaggtatcgg 4446
Query: 229 tggtattttctttgatgatgtcgatgatcgtgatccaaacgaaatcttgcaaatggttga 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4447 tggtattttctttgatgatgtcgatgatcgtgatccaaacgaaatcttgcaaatggttga 4506
Query: 289 aaactgttttgatgccttcttgccatcttacctcgaaatcatcaaaagaagaaaggatat 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4507 aaactgttttgatgccttcttgccatcttacctcgaaatcatcaaaagaagaaaggatat 4566
Query: 349 gccttacactgaagaagaaagacaatggcaacaaattagacgtggcagatacgttgaatt 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4567 gccttacactgaagaagaaagacaatggcaacaaattagacgtggcagatacgttgaatt 4626
Query: 409 caacctagtccttgacagaggtactcaattcggtttaagaactccaggatcccgtgtcga 468
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 4627 caacctagtccttgacagaggtactcaattcggnttaagaactccaggatcccgtgtcga 4686
Query: 469 aagtattttgatgtctttgcctgtgactgcttcgtggttgtat 511
|||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 4687 aagtattttgatgtctttgcctgtgactgcttcgtgtttgtat 4729
>3x_Contig1604
Length = 15703
Score = 535 bits (270), Expect = e-152
Identities = 335/350 (95%), Gaps = 6/350 (1%)
Strand = Plus / Plus
Query: 619 aattcttagtttctaatgatcttaatttcttacgcttcaaaaaccaagtcggtcgttagt 678
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 2 aattcttagtttctaatgatcttaatttcttacgcttcaaaaacca-gtcggtcgttagt 60
Query: 679 accatacagcgttgcacgaaatggttctgtcaggccgtcgacaatacttttattttgtct 738
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 61 accatacagcgttgcacgaaatggttctgtcacgccgtcgacaatacttttattttgtct 120
Query: 739 tgttcaatctatttgtagatttatacattatattacactttgattcagaagaagtttcat 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgttcaatctatttgtagatttatacattatattacactttgattcagaagaagtttcat 180
Query: 799 caaaccctaaacacttccttttgcgagcctaatg-aagcgtgatctacctttcatcattt 857
|||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 181 caaaccctaacaacttccttttgcgagcctaatgaaagcgtgatctacctttcatcattt 240
Query: 858 gaaagatt-agcatgcgtttttagctggggcgagagac-aatggcagcgattaaagccga 915
|||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 241 gaaagattaagcatgcgtttttagct-gggcgagagacaaatggcagcgattaaagccga 299
Query: 916 acattnatcttcttgtccnngtttttgctctaagcgatgtnattactgct 965
||||| |||||||||| | ||||||||||||||||||| || ||||||
Sbjct: 300 acatttatcttcttgt-cagttttttgctctaagcgatgtaataactgct 348
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7887
Number of Sequences: 1807
Number of extensions: 7887
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 2
length of query: 985
length of database: 10,358,551
effective HSP length: 16
effective length of query: 969
effective length of database: 10,329,639
effective search space: 10009420191
effective search space used: 10009420191
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)