BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZG07RM1.SCF screened BAC_end
(959 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig925 1679 0.0
>3x_Contig925
Length = 3823
Score = 1679 bits (847), Expect = 0.0
Identities = 897/910 (98%), Gaps = 4/910 (0%)
Strand = Plus / Minus
Query: 48 atttcccccccctttgaatatgaaaacaaccttatactagatagaaaaggcaggtttttt 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3443 atttcccccccctttgaatatgaaaacaaccttatactagatagaaaaggcaggtttttt 3384
Query: 108 tcagatcctctttagctgcgcttattgattccaaaatattagtaaactatagttactgta 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3383 tcagatcctctttagctgcgcttattgattccaaaatattagtaaactatagttactgta 3324
Query: 168 gagcgtgcagtggtgctggtatgaccttttaacctggtgagatgttcatgaagatgagtt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3323 gagcgtgcagtggtgctggtatgaccttttaacctggtgagatgttcatgaagatgagtt 3264
Query: 228 agatgtaaatccttatgatcgttgttttaatatcaaaaaactcaaaacgcgaaaacgcga 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3263 agatgtaaatccttatgatcgttgttttaatatcaaaaaactcaaaacgcgaaaacgcga 3204
Query: 288 aactggtgttttggggagagttttcgggcccatttctggggaccggaaactggggatgcg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3203 aactggtgttttggggagagttttcgggcccatttctggggaccggaaactggggatgcg 3144
Query: 348 attaaaagacagtacagacagcactctcaaccgcagagacctcatatatagccataacgc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3143 attaaaagacagtacagacagcactctcaaccgcagagacctcatatatagccataacgc 3084
Query: 408 ccacaaagggtttatagatgatctactggcccttcacaagctctaaatcgctgatacatg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3083 ccacaaagggtttatagatgatctactggcccttcacaagctctaaatcgctgatacatg 3024
Query: 468 aggaattgaccgatatttagccgtatcttgtctttaacccactttgttacccggcctttt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3023 aggaattgaccgatatttagccgtatcttgtctttaacccactttgttacccggcctttt 2964
Query: 528 gccctttttccgtaatcatttgaccacttaatcattgaactatccaatcaagtcacttaa 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2963 gccctttttccgtaatcatttgaccacttaatcattgaactatccaatcaagtcacttaa 2904
Query: 588 cgatgagtaacatcacttctgttcagtctctgtatacttaacttgtccatttgacgagtc 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2903 cgatgagtaacatcacttctgttcagtctctgtatacttaacttgtccatttgacgagtc 2844
Query: 648 tccgacagctagctagactgttataataccaattgtccccgccatgtcagttctcagacc 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2843 tccgacagctagctagactgttataataccaattgtccccgccatgtcagttctcagacc 2784
Query: 708 attaagattgttactactgggtgcacccggttctggtaaaggtactcagacctcgaaact 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2783 attaagattgttactactgggtgcacccggttctggtaaaggtactcagacctcgaaact 2724
Query: 768 gttgaaagaattcggatccatcaaggctatctcatctggagaattgctacgnntaacaga 827
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 2723 gttgaaagaattcggatccatcaaggctatctcatctggagatttgctacgta-aacaga 2665
Query: 828 ttgaacatggcacaccgnntagttttaagtgccttcctcgtatattgagaaaggccagtt 887
||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 2664 ttgaacatggcacaccg-ttaggtttaagtgcc-tcctcgtatattgagaaaggccagtt 2607
Query: 888 gttacccgatgatttgatcaccgnanttgtgtgtgacgaaattgaagtcacgtggctggt 947
||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||
Sbjct: 2606 gttacccgatgatttgatcaccggagttgtgtgtgacg-aattgaagtcacgtggctggt 2548
Query: 948 ttaattcaaa 957
| ||| ||||
Sbjct: 2547 taaatccaaa 2538
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5544
Number of Sequences: 1807
Number of extensions: 5544
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 959
length of database: 10,358,551
effective HSP length: 16
effective length of query: 943
effective length of database: 10,329,639
effective search space: 9740849577
effective search space used: 9740849577
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)