BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZG08FM1.SCF screened BAC_end
(928 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1780 1558 0.0
>3x_Contig1780
Length = 27883
Score = 1558 bits (786), Expect = 0.0
Identities = 827/837 (98%), Gaps = 3/837 (0%)
Strand = Plus / Minus
Query: 93 atgtcaacgatgttcagcatccaattttgaagtgtctattctcctataagacatattgga 152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22331 atgtcaacgatgttcagcatccaattttgaagtgtctattctcctataagacatattgga 22272
Query: 153 aagatcacttgtcaagaattgaatattctacattgatgtccccattggtaccggattaca 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22271 aagatcacttgtcaagaattgaatattctacattgatgtccccattggtaccggattaca 22212
Query: 213 atcataaagatcgtctgtccccaaaatcactccaaatggattcaatgagatggatgcaaa 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22211 atcataaagatcgtctgtccccaaaatcactccaaatggattcaatgagatggatgcaaa 22152
Query: 273 tcccccctactcctacgactactccctccacaccgacattggcaaaatcctccaggccgt 332
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 22151 tcccccctactcctacgactactccctccacaccgacattggccaaatcctccaggccgt 22092
Query: 333 cattaccaacatcatcgtcacatcacccgagcggatcgttcagaagacatttcaagagag 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22091 cattaccaacatcatcgtcacatcacccgagcggatcgttcagaagacatttcaagagag 22032
Query: 393 attcatcaaccatggatatcgatttcttcgaacaagagcccatccagcatgtcaaaagag 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22031 attcatcaaccatggatatcgatttcttcgaacaagagcccatccagcatgtcaaaagag 21972
Query: 453 ggaaagttggagaatgttaacacgaagactgttaatctcgataaacccattcatatcact 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21971 ggaaagttggagaatgttaacacgaagactgttaatctcgataaacccattcatatcact 21912
Query: 513 tacatagagaagaatagtgttaaacacttttttagcatacaaaattgatatttgatctat 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21911 tacatagagaagaatagtgttaaacacttttttagcatacaaaattgatatttgatctat 21852
Query: 573 ttttaaccttactatctaacgaactcaaatttgcttccattgacctaagagctcaacttc 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21851 ttttaaccttactatctaacgaactcaaatttgcttccattgacctaagagctcaacttc 21792
Query: 633 tgatcacagaaagttaatcgcatagatcacttcgacctggtatcatgtgtcatggcaaga 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21791 tgatcacagaaagttaatcgcatagatcacttcgacctggtatcatgtgtcatggcaaga 21732
Query: 693 cgacataaaagcaacaaattttctcacctggtgtgtcaattgaaaagagcaatattaaga 752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21731 cgacataaaagcaacaaattttctcacctggtgtgtcaattgaaaagagcaatattaaga 21672
Query: 753 tacaaatccaagaggttttttgagtcgttagccatccctatcaatatagc-agaaatact 811
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 21671 tacaaatccaagaggttttttgagtcgttagccatccctatcaa-atagcaagaaatact 21613
Query: 812 gtgtagtatgagtagtagtactaccactacactactatcgttgntgtgttaatgaaatag 871
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct: 21612 gtgtagtatgagtagtagtactaccactacactactatcgttgttgtgttaatgaatagg 21553
Query: 872 ctatcaatga-atttcacgagactttctttttctcgcttgcgcttatctgccgataa 927
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 21552 ctatcaatgatatttcacgagacttcttttttctcgcttgcgcttatctgccgataa 21496
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6287
Number of Sequences: 1807
Number of extensions: 6287
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)