BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZG08RM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1685 1572 0.0
>3x_Contig1685
Length = 14400
Score = 1572 bits (793), Expect = 0.0
Identities = 858/876 (97%), Gaps = 3/876 (0%)
Strand = Plus / Minus
Query: 46 ttatttttgttttcaatatttaagttcaaaagcattgaataatcccactttttcatacac 105
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 14016 ttatttttgttttcaatattcaagttcaaaagcattgaataatcccactttttcatacac 13957
Query: 106 atataagtgttgcagagatcattgaggtttgcttccaaaactttatttttcttgaatgtg 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13956 atataagtgttgcagagatcattgaggtttgcttccaaaactttatttttcttgaatgtg 13897
Query: 166 ttatgtttcatcttgtcttgatgaagataactagagggtaaaattccattatttcttcca 225
|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 13896 ttatgtttcatcttgtcttgatgaagataactagagggtaaaattccagaatt-cttcca 13838
Query: 226 gttagaattgattcgttctttaggtatagcatcccatgcaattttaatgaatttaaatgc 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13837 gttagaattgattcgttctttaggtatagcatcccatgcaattttaatgaatttaaatgc 13778
Query: 286 atttgtcatagttaaacaactttgttcatatgtgagtagtttgaaatccgtaagactttg 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13777 atttgtcatagttaaacaactttgttcatatgtgagtagtttgaaatccgtaagactttg 13718
Query: 346 tgaaatatttttctggagatcaattaaggctttgtattgttgtaccctatatcttgcctt 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13717 tgaaatatttttctggagatcaattaaggctttgtattgttgtaccctatatcttgcctt 13658
Query: 406 aaattcttctaataccccccaattgaacggtaaaaatcttgaattagcagacgtgtaaat 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13657 aaattcttctaataccccccaattgaacggtaaaaatcttgaattagcagacgtgtaaat 13598
Query: 466 tagcaggatattttgaaggtttaaattgacaattctgtgagagcatgaatcatcaagtat 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13597 tagcaggatattttgaaggtttaaattgacaattctgtgagagcatgaatcatcaagtat 13538
Query: 526 aatccaaatttttctgttatctgagactaaccttttgtcaaatgccaccaaccaatcatg 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13537 aatccaaatttttctgttatctgagactaaccttttgtcaaatgccaccaaccaatcatg 13478
Query: 586 gaatacagtactagtcaaccaagattttctgttactttgatatacaatcccaaaccgctt 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13477 gaatacagtactagtcaaccaagattttctgttactttgatatacaatcccaaaccgctt 13418
Query: 646 acctgttttctcacctagatggacatcattagtaccgatatggctatcttcccccatata 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13417 acctgttttctcacctagatggacatcattagtaccgatatggctatcttcccccatata 13358
Query: 706 atttttgaaagtgttgtaattttcgtatctacctattacncaagggttcattttttcagt 765
||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||
Sbjct: 13357 atttttgaaagtgttgtaattttcgtatctacctattaccaaggggttcagtttttcagt 13298
Query: 766 gccactcaagtttgcacaaagcatgacagtaattacctcctatctcttctgtatactatt 825
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 13297 gccactcaagtttgcacaaagcatgacagtaattacctctaatctcttctgtatactatt 13238
Query: 826 agtttcatactgcgcataatcttaaggaa-gttgtattgcagaaatgtttcattcaaggt 884
|||||||||||||||||||||| |||||| ||||||| ||||||||||||| ||||||
Sbjct: 13237 agtttcatactgcgcataatctaaaggaaggttgtatgcaagaaatgtttcatccaaggt 13178
Query: 885 aaatagagaatctttcggnaatttgagcaataaatt 920
|||||||||||||| ||| |||||||||||||||||
Sbjct: 13177 aaatagagaatcttccgg-aatttgagcaataaatt 13143
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8037
Number of Sequences: 1807
Number of extensions: 8037
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)