BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZG09FM1.SCF screened BAC_end
(978 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1463 1635 0.0
>3x_Contig1463
Length = 9363
Score = 1635 bits (825), Expect = 0.0
Identities = 882/897 (98%), Gaps = 5/897 (0%)
Strand = Plus / Plus
Query: 87 tcaccaagtggaggtagtgctgttcccggtgcaggaaacatgaccggaggtgttaatgat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1767 tcaccaagtggaggtagtgctgttcccggtgcaggaaacatgaccggaggtgttaatgat 1826
Query: 147 tctgccatcccaggttctgacctgatgatgcattatccccaacagtatatgaaccataat 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1827 tctgccatcccaggttctgacctgatgatgcattatccccaacagtatatgaaccataat 1886
Query: 207 gggcaaaggccaatgttctggatgaatccggatttgaattctagtgccatcgacgacacc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1887 gggcaaaggccaatgttctggatgaatccggatttgaattctagtgccatcgacgacacc 1946
Query: 267 actgcaggcgaagatccgcagaatcaggattcctttgtgcgcggtgcatcattcacttta 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1947 actgcaggcgaagatccgcagaatcaggattcctttgtgcgcggtgcatcattcacttta 2006
Query: 327 gaatcttctgaacaggggaatgatgccaaggtgccaggtgctaacacttctagaagacaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2007 gaatcttctgaacaggggaatgatgccaaggtgccaggtgctaacacttctagaagacaa 2066
Query: 387 actttccatgcagtgtcagctactgacttgttgaacaattctacttccagtcccactgaa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2067 actttccatgcagtgtcagctactgacttgttgaacaattctacttccagtcccactgaa 2126
Query: 447 acgacggatgccactggtaccaatgcatcagcaacatcacccgaagcttctgcctcgaaa 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2127 acgacggatgccactggtaccaatgcatcagcaacatcacccgaagcttctgcctcgaaa 2186
Query: 507 aaagagatgcaggatcgtgtttatcctcaagctgctgcttacccttacaccggtgcattg 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2187 aaagagatgcaggatcgtgtttatcctcaagctgctgcttacccttacaccggtgcattg 2246
Query: 567 ctgcaaccaaatcctgtactatctggccatccactgggtcatcatccccatcctatcggt 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2247 ctgcaaccaaatcctgtactatctggccatccactgggtcatcatccccatcctatcggt 2306
Query: 627 tccccattccctggttacggttttaatacagctntctctcctgtcccgggccctactaac 686
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 2307 tccccattccctggttacggttttaatacagctttctctcctgtcccgggccctactaac 2366
Query: 687 acgttgaatgcaggttctccagccatctccgcagatggcaaagaagcaaacagcagcggc 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2367 acgttgaatgcaggttctccagccatctccgcagatggcaaagaagcaaacagcagcggc 2426
Query: 747 gatccaagtggccaatctaaccgtcatgtacactctggaactaattncccaggattgagt 806
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 2427 gatccaagtggccaatctaaccgtcatgtacactctggaactaattccccaggattgagt 2486
Query: 807 caacctggtagtctgccaatgtcaggacctaacccgtggatgtttgctgcttctcacggt 866
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 2487 caacctggtagtctgccaatgtcaggacctaacccgtggatgtttgctgctcctcacggt 2546
Query: 867 agtcctaacttcct-gttncacaccctcatcattccggtcacgcaggcccttcagctggc 925
|||||||||||||| ||| |||||||||||||| | ||||||||||||||| ||||||||
Sbjct: 2547 agtcctaacttcctggttccacaccctcatcatccgggtcacgcaggccctccagctggc 2606
Query: 926 catctaagacc-cagagcaataccctt--acatag-aaacgtcatttcaataacaat 978
|||| |||||| |||||||||| || | |||||| |||||||||||||||||||||
Sbjct: 2607 catcaaagaccacagagcaataaccctcaacatagaaaacgtcatttcaataacaat 2663
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4166
Number of Sequences: 1807
Number of extensions: 4166
Number of successful extensions: 23
Number of sequences better than 1.0e-20: 1
length of query: 978
length of database: 10,358,551
effective HSP length: 16
effective length of query: 962
effective length of database: 10,329,639
effective search space: 9937112718
effective search space used: 9937112718
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)