BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZG09RM1.SCF screened BAC_end
(887 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1770 745 0.0
>3x_Contig1770
Length = 29267
Score = 745 bits (376), Expect = 0.0
Identities = 456/476 (95%), Gaps = 5/476 (1%)
Strand = Plus / Minus
Query: 42 gcttggttacccaaccagttacagatgaaatccttgtcacctgcgtaaattagaactgga 101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5302 gcttggttacccaaccagttacagatgaaatccttgtcacctgcgtaaattagaactgga 5243
Query: 102 agatcttgttcca-caattcggtaacgtgcttgtggtatggtttcatccaatcacctgca 160
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5242 agatcttgttccaacaattcggtaacgtgcttgtggtatggtttcatccaatcacctgca 5183
Query: 161 aataagaagtttctgttaatgtcgaagttacacgattcatagttgtcaactttttttt-a 219
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 5182 aataagaagtttctgttaatgtcgaagttacacgattcatagttgtcaacttcagcacca 5123
Query: 220 acggcttccttaacgaaatccaagttcaaatattcgtccatgtatttcatttcatcgtaa 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5122 acggcttccttaacgaaatccaagttcaaatattcgtccatgtatttcatttcatcgtaa 5063
Query: 280 cacaattcaccttgacattctttacgaatatcgtaaacgttcttaccagtactttgataa 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5062 cacaattcaccttgacattctttacgaatatcgtaaacgttcttaccagtactttgataa 5003
Query: 340 ggacccattttgagcgttattacaatagatggaggctgg-acacaagaccaaacggattc 398
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 5002 ggaccca-tttgagcgttattacaatagatggaggctggaacacaagaccaaacggattc 4944
Query: 399 gtattcgtaacaggattggatcaagtttagacatctttgtaaagttt-caacatattgtc 457
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 4943 gtattcgtaacaggattggatcaagtttagacatcttggtaaagtttccaacatattgtc 4884
Query: 458 acattgttcttggtccaatacggaatggtaaccaactttaccacaagccattggtt 513
|||||||||| | ||||||||||| | | |||| ||| |||||||||||||||||
Sbjct: 4883 acattgttctggttccaatacggatggttcaccaccttcaccacaagccattggtt 4828
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 23,973
Number of Sequences: 1807
Number of extensions: 23973
Number of successful extensions: 409
Number of sequences better than 1.0e-20: 1
length of query: 887
length of database: 10,358,551
effective HSP length: 16
effective length of query: 871
effective length of database: 10,329,639
effective search space: 8997115569
effective search space used: 8997115569
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)