BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZH01RM1.SCF screened BAC_end
(967 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig826 1475 0.0
>3x_Contig826
Length = 2477
Score = 1475 bits (744), Expect = 0.0
Identities = 786/799 (98%), Gaps = 1/799 (0%)
Strand = Plus / Plus
Query: 47 atttgttcgggcaatatttttgttttcatcgaggaaaaatccggtattaaacgatggact 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 936 atttgttcgggcaatatttttgttttcatcgaggaaaaatccggtattaaacgatggact 995
Query: 107 gacgggatcccctggtctccgtcaagggttgttggtaagtttttggtgtataaagagttg 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 996 gacgggatcccctggtctccgtcaagggttgttggtaagtttttggtgtataaagagttg 1055
Query: 167 ttcagatcgaatagcggtggtggtggcggtagtgcgaagcagcagtcacgtgattctacg 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1056 ttcagatcgaatagcggtggtggtggcggtagtgcgaagcagcagtcacgtgattctacg 1115
Query: 227 aattattccaatacaggtagtaccggcgatgcctgcatcgccggtactgcgacatacagt 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1116 aattattccaatacaggtagtaccggcgatgcctgcatcgccggtactgcgacatacagt 1175
Query: 287 tacagatcggatgggttgatcaagaaagccttttcgcttcgagttaaatcgaacgtggat 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1176 tacagatcggatgggttgatcaagaaagccttttcgcttcgagttaaatcgaacgtggat 1235
Query: 347 gagctagatccgacgcaggatcctcgtgatcgacatcttttcactatccatatcatctcg 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1236 gagctagatccgacgcaggatcctcgtgatcgacatcttttcactatccatatcatctcg 1295
Query: 407 tactatacgctggatgatatcacgaacggagttctcgtcacaccaagtgaaatggtacga 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1296 tactatacgctggatgatatcacgaacggagttctcgtcacaccaagtgaaatggtacga 1355
Query: 467 ttccagaaagtggttccgtcgcaacggttgttggatgcgttggaacatacgagtatcggg 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1356 ttccagaaagtggttccgtcgcaacggttgttggatgcgttggaacatacgagtatcggg 1415
Query: 527 aacttcaagactatcggatcggtgaaatcgaaaaagaagaagaaaccgtaccatcaacac 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1416 aacttcaagactatcggatcggtgaaatcgaaaaagaagaagaaaccgtaccatcaacac 1475
Query: 587 cagcagcatgaatatgaggttcaagttccggggctagccgctcctagcattccttctttc 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1476 cagcagcatgaatatgaggttcaagttccggggctagccgctcctagcattccttctttc 1535
Query: 647 aagcagatgcctcagcacatgcctcagcaggtaccttcgcagatgtttgtaccttcgcaa 706
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1536 aagcagatgcctcagcacatgcctcagcaggtaccttcgcagatgtttgtacctccgcaa 1595
Query: 707 aggattatccaaccgtcgatatttccaccgtcttcacctggccctccangccagttcaca 766
||||||||||||||||||||||| |||||| || |||||||||||||| |||||| ||
Sbjct: 1596 aggattatccaaccgtcgatattcccaccgcctccacctggccctccaggccagtcacca 1655
Query: 767 gcgtttcccttcttactaccaacaaatgtatcatcagggaacacaagcttaactgtcgca 826
||| |||||| |||||||||||||||||||||| ||||||||||||||| ||||| ||||
Sbjct: 1656 gcg-ttccctccttactaccaacaaatgtatcagcagggaacacaagctcaactgccgca 1714
Query: 827 gtacccttacaactatact 845
|||||||||||||||||||
Sbjct: 1715 gtacccttacaactatact 1733
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6656
Number of Sequences: 1807
Number of extensions: 6656
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 967
length of database: 10,358,551
effective HSP length: 16
effective length of query: 951
effective length of database: 10,329,639
effective search space: 9823486689
effective search space used: 9823486689
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)