BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZH02RM1.SCF screened BAC_end
(974 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1236 1691 0.0
>3x_Contig1236
Length = 4331
Score = 1691 bits (853), Expect = 0.0
Identities = 916/931 (98%), Gaps = 5/931 (0%)
Strand = Plus / Plus
Query: 45 gcttaatgcattattcagccaccatacataatgaagttaattgatctacaatgcaaaagc 104
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 584 gcttaatgcattattcagccaccaaacataatgaagttaattgatctacaatgcaaaagc 643
Query: 105 cttcgtaacatatattcacttcttcgtatctatatattttttatattgtgttattacccc 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 cttcgtaacatatattcacttcttcgtatctatatattttttatattgtgttattacccc 703
Query: 165 ttttaatcggcttttgaatgatacaacaatgccttcaaccgcatccaattgatcataatg 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 ttttaatcggcttttgaatgatacaacaatgccttcaaccgcatccaattgatcataatg 763
Query: 225 cttctccaaatcatcacatttctgtaaaagatccttcgccatcccaatatttccatcaat 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 cttctccaaatcatcacatttctgtaaaagatccttcgccatcccaatatttccatcaat 823
Query: 285 gacttcctctatgataccatgttcaactatttcattctgtttttgacatatctctaacgt 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 gacttcctctatgataccatgttcaactatttcattctgtttttgacatatctctaacgt 883
Query: 345 ctttaattggatcgactccaattcatcttgaatcttgtacaataaataatcataatcgac 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884 ctttaattggatcgactccaattcatcttgaatcttgtacaataaataatcataatcgac 943
Query: 405 aattagcttgtcgatattgaaggggtcactatcagcttcgacatcattgttttcctgagg 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 944 aattagcttgtcgatattgaaggggtcactatcagcttcgacatcattgttttcctgagg 1003
Query: 465 ttctactgctgtaatgttttcactcatcatagcattgtctcttttacttcaagtatgttt 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1004 ttctactgctgtaatgttttcactcatcatagcattgtctcttttacttcaagtatgttt 1063
Query: 525 attaccagctatccggaattggcagacttcaggacagatacattaacacattaatgaata 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1064 attaccagctatccggaattggcagacttcaggacagatacattaacacattaatgaata 1123
Query: 585 ccaaatctgacatttgagtagtcttcctctgctgaatatcttctcagtgtttcataaacc 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1124 ccaaatctgacatttgagtagtcttcctctgctgaatatcttctcagtgtttcataaacc 1183
Query: 645 actctttgttgatatctttctttaaaaggggtctttccaaatgttggttacaggaaaaaa 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1184 actctttgttgatatctttctttaaaaggggtctttccaaatgttggttacaggaaaaaa 1243
Query: 705 aataaagtaaaggctttattcatcttcagatatgttaaagaatttctcaaccatccataa 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1244 aataaagtaaaggctttattcatcttcagatatgttaaagaatttctcaaccatccataa 1303
Query: 765 tctgnaacata-tttcaccttactggattcaacgctctacatcgcattctgctttagtca 823
|||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1304 tctg-aacatattttcaccttactggattcaacgctctacatcgcattctgcttaggtca 1362
Query: 824 atttagaagtgccaactactagtgctcaaacggtaggacttcaatcgatttgaactctta 883
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1363 attagaaagtgccaactactagtgctcaaacggtaggactccaatcgatttgaactctta 1422
Query: 884 ttcgtgaatagatctttca-ctttttgtttctaagtgaaaac-cgacatgatgtctattc 941
| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 1423 tccgtgaatagatctttcacctttttgtttctaagtgaaaacacgacatgatgtctattc 1482
Query: 942 atctgnatgaagga-cagtganacggatgca 971
||||| |||||||| |||||| |||||||||
Sbjct: 1483 atctggatgaaggaccagtgagacggatgca 1513
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8603
Number of Sequences: 1807
Number of extensions: 8603
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 974
length of database: 10,358,551
effective HSP length: 16
effective length of query: 958
effective length of database: 10,329,639
effective search space: 9895794162
effective search space used: 9895794162
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)