BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZH03FM1.SCF screened BAC_end
(979 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1462 1598 0.0
>3x_Contig1462
Length = 8247
Score = 1598 bits (806), Expect = 0.0
Identities = 860/870 (98%), Gaps = 6/870 (0%)
Strand = Plus / Minus
Query: 87 tgataaagattttaaaagggcggaacccggttaatgacattttcgaaagttttcaagatc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4895 tgataaagattttaaaagggcggaacccggttaatgacattttcgaaagttttcaagatc 4836
Query: 147 tttccatgttccgaatgtagaagaaaccagggttgagaaagccggtcatcccaaccttca 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4835 tttccatgttccgaatgtagaagaaaccagggttgagaaagccggtcatcccaaccttca 4776
Query: 207 ctatcacgtgattcagcttcaccaaaatcacgtgattataactggagttatttttcttca 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4775 ctatcacgtgattcagcttcaccaaaatcacgtgattataactggagttatttttcttca 4716
Query: 267 accacgtgacatgtgaaagagtgactttacacattaggaaatataattccacgcagaacg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4715 accacgtgacatgtgaaagagtgactttacacattaggaaatataattccacgcagaacg 4656
Query: 327 caaaacgtacgctctaatctatctcttaagttagagcactagaaataacggcggatatgg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4655 caaaacgtacgctctaatctatctcttaagttagagcactagaaataacggcggatatgg 4596
Query: 387 gtattattatataacgggatatctattgtacataattgtaatattaacggaatcgtcttt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4595 gtattattatataacgggatatctattgtacataattgtaatattaacggaatcgtcttt 4536
Query: 447 tcttcattaccgattaaattactactttttggttgataggaaaagtgtcagttttcaact 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4535 tcttcattaccgattaaattactactttttggttgataggaaaagtgtcagttttcaact 4476
Query: 507 tacaacaaagctgccaccagggcaacgacaccgactagggaagagcctagtacttcttgt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4475 tacaacaaagctgccaccagggcaacgacaccgactagggaagagcctagtacttcttgt 4416
Query: 567 ttcaaagcagcaccagagtatggttcgacggtgtgttcagtagaggtagagttatcacct 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4415 ttcaaagcagcaccagagtatggttcgacggtgtgttcagtagaggtagagttatcacct 4356
Query: 627 gcgtatgtttctagagtagcaactgctagagtagtggtagagtatggagtagaagtggaa 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4355 gcgtatgtttctagagtagcaactgctagagtagtggtagagtatggagtagaagtggaa 4296
Query: 687 agttcggtggaaacggcagaaacggtgacttctggggtttcagtgacatcgacataggtg 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4295 agttcggtggaaacggcagaaacggtgacttctggggtttcagtgacatcgacataggtg 4236
Query: 747 acaccatcagagacaacggttttcttgagcaaatacagcgacagcagatagagtcaaagc 806
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 4235 acaccatcagagacaacgg-tttcttgagcaaatacagcgacagcagatagagtcaaagc 4177
Query: 807 agagataacggtagagaattgcattgctaatttttttttttgttctgggttaaaagggaa 866
|||||||||||||||||||||||||| ||| |||||||||||||||| ||||||| ||||
Sbjct: 4176 agagataacggtagagaattgcattgttaa-ttttttttttgttctgtgttaaaa-ggaa 4119
Query: 867 aggatattagttagaggtttgaacaactagggggatatgctttgtctaatgaaatctgga 926
|||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||| |
Sbjct: 4118 aggata-tagttagaggtttgaacaacta-ggggatatgc-ttgtctaatgaaatctgta 4062
Query: 927 atataacgtaatattatctacaccatttgg 956
|||||||||| |||||||||||||||||||
Sbjct: 4061 atataacgtagtattatctacaccatttgg 4032
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,223
Number of Sequences: 1807
Number of extensions: 12223
Number of successful extensions: 78
Number of sequences better than 1.0e-20: 1
length of query: 979
length of database: 10,358,551
effective HSP length: 16
effective length of query: 963
effective length of database: 10,329,639
effective search space: 9947442357
effective search space used: 9947442357
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)