BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC21ZH03RM1.SCF screened BAC_end (1041 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1801 541 e-154 >3x_Contig1801 Length = 57606 Score = 541 bits (273), Expect = e-154 Identities = 295/303 (97%) Strand = Plus / Plus Query: 46 gctttatgaatactaaataataatttcgatacaaaagactgggaaaagagatagattaga 105 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 35767 gctttatgaatactaaataataattccgatacaaaagactgggaaaagagatagattaga 35826 Query: 106 agtcatcttagttactacttagataaactatccgatccgttttgaggattaatttgttag 165 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 35827 agtcatcttagttactacttagataaactatccgatccgttttgaggattaatttgttag 35886 Query: 166 gttcctgttttgcacttacatttgctgcgtttttttttcaacctaatttcttaatcnatt 225 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 35887 gttcctgttttgcacttacatttgctgcgtttttttttcaacctaatttcttaatctaag 35946 Query: 226 aaaggtgtgtttttgaagatatacggtctcacatccagccagactttgtttcgattgagc 285 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 35947 aaaggtgtgtttttgaagatatacggtctcacatccagccagactttgtttcgattgagc 36006 Query: 286 gtctaaaaagaactataagcggcactggttatattggggttgaattttgnaattgtggct 345 ||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||| Sbjct: 36007 gtctaaaaagaactataagcggcactggttatattggggttgagatttgtaattgttgct 36066 Query: 346 cac 348 ||| Sbjct: 36067 cac 36069 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 25,698 Number of Sequences: 1807 Number of extensions: 25698 Number of successful extensions: 221 Number of sequences better than 1.0e-20: 1 length of query: 1041 length of database: 10,358,551 effective HSP length: 16 effective length of query: 1025 effective length of database: 10,329,639 effective search space: 10587879975 effective search space used: 10587879975 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)