BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC21ZH03RM1.SCF screened BAC_end
         (1041 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1801                                                         541   e-154

>3x_Contig1801 
          Length = 57606

 Score =  541 bits (273), Expect = e-154
 Identities = 295/303 (97%)
 Strand = Plus / Plus

                                                                         
Query: 46    gctttatgaatactaaataataatttcgatacaaaagactgggaaaagagatagattaga 105
             ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 35767 gctttatgaatactaaataataattccgatacaaaagactgggaaaagagatagattaga 35826

                                                                         
Query: 106   agtcatcttagttactacttagataaactatccgatccgttttgaggattaatttgttag 165
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35827 agtcatcttagttactacttagataaactatccgatccgttttgaggattaatttgttag 35886

                                                                         
Query: 166   gttcctgttttgcacttacatttgctgcgtttttttttcaacctaatttcttaatcnatt 225
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  
Sbjct: 35887 gttcctgttttgcacttacatttgctgcgtttttttttcaacctaatttcttaatctaag 35946

                                                                         
Query: 226   aaaggtgtgtttttgaagatatacggtctcacatccagccagactttgtttcgattgagc 285
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35947 aaaggtgtgtttttgaagatatacggtctcacatccagccagactttgtttcgattgagc 36006

                                                                         
Query: 286   gtctaaaaagaactataagcggcactggttatattggggttgaattttgnaattgtggct 345
             |||||||||||||||||||||||||||||||||||||||||||  |||| |||||| |||
Sbjct: 36007 gtctaaaaagaactataagcggcactggttatattggggttgagatttgtaattgttgct 36066

                
Query: 346   cac 348
             |||
Sbjct: 36067 cac 36069


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 25,698
Number of Sequences: 1807
Number of extensions: 25698
Number of successful extensions: 221
Number of sequences better than 1.0e-20: 1
length of query: 1041
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1025
effective length of database: 10,329,639
effective search space: 10587879975
effective search space used: 10587879975
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)