BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZH04FM1.SCF screened BAC_end
(958 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1632 1489 0.0
>3x_Contig1632
Length = 13927
Score = 1489 bits (751), Expect = 0.0
Identities = 766/771 (99%)
Strand = Plus / Plus
Query: 87 ctctctttcacctcaccccacattcgctatgtcttacaacgatccgtaccaggatcaagg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7155 ctctctttcacctcaccccacattcgctatgtcttacaacgatccgtaccaggatcaagg 7214
Query: 147 tggtcatatcccaagggatgagtacgaccaacaacagtacgatgaatatggtcaaccaat 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7215 tggtcatatcccaagggatgagtacgaccaacaacagtacgatgaatatggtcaaccaat 7274
Query: 207 ctatgcgcaagatcaatattacgcgcaagacccgggctactacgatcaatctgctgaata 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7275 ctatgcgcaagatcaatattacgcgcaagacccgggctactacgatcaatctgctgaata 7334
Query: 267 ttaccaacagccaggtcaaccgggccaaccgggccaaggctactatgatcagcctcgtgg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7335 ttaccaacagccaggtcaaccgggccaaccgggccaaggctactatgatcagcctcgtgg 7394
Query: 327 tgctggccaggatcctgaaaatttctctgatttcagttacgctcctccaggtaccccagg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7395 tgctggccaggatcctgaaaatttctctgatttcagttacgctcctccaggtaccccagg 7454
Query: 387 tggctacgatagttacggaggcgcttccgggaacggatacggtcaatatgctccttctca 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7455 tggctacgatagttacggaggcgcttccgggaacggatacggtcaatatgctccttctca 7514
Query: 447 aatgagttatggtgatccaagatcatctggtgcttcgacaccaatttatggtggtgaagg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7515 aatgagttatggtgatccaagatcatctggtgcttcgacaccaatttatggtggtgaagg 7574
Query: 507 tttcgatccttcagcagttgccatggctttaccaactgaaccatatccagcatggaccgc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7575 tttcgatccttcagcagttgccatggctttaccaactgaaccatatccagcatggaccgc 7634
Query: 567 tgacactcagactccagtgaccgcaagcgaaattgaagatgttttcatcgatttgactaa 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7635 tgacactcagactccagtgaccgcaagcgaaattgaagatgttttcatcgatttgactaa 7694
Query: 627 taaatttgggttccaaagagattccatgagaaacatgttcgatcatttcatgactctatt 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7695 taaatttgggttccaaagagattccatgagaaacatgttcgatcatttcatgactctatt 7754
Query: 687 ggattctagagcttcaagaatgtcttctcaacaagcattgttatctttacatgctgatta 746
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 7755 ggattctagagcttcaagaatgtctcctcaacaagcattgttatctttacatgctgatta 7814
Query: 747 tatcggaagtgatagtgccaattataagaaatggtacttcgctgcacaactagatatgga 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7815 tatcggaagtgatagtgccaattataagaaatggtacttcgctgcacaactagatatgga 7874
Query: 807 tgatgaaattggtttcagaaatatgagtcttgggtaaatgtttaggaaggc 857
||||||||||||||||||||||||||||||||| |||||| ||| |||||
Sbjct: 7875 tgatgaaattggtttcagaaatatgagtcttggtaaaatgtctagaaaggc 7925
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5845
Number of Sequences: 1807
Number of extensions: 5845
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)