BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC21ZH04RM1.SCF screened BAC_end
         (957 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1795                                                        1681   0.0  

>3x_Contig1795 
          Length = 38452

 Score = 1681 bits (848), Expect = 0.0
 Identities = 898/907 (99%), Gaps = 6/907 (0%)
 Strand = Plus / Minus

                                                                        
Query: 48   tgaacataaatcaataattaagtaatccgtccatttcagcacgttgctccggttattggt 107
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5883 tgaacataaatcaataattaagtaatccgtccatttcagcacgttgctccggttattggt 5824

                                                                        
Query: 108  tcgtggaagccacttgtagaagatagtccatagttttagattaaacaagaagatgttcgt 167
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5823 tcgtggaagccacttgtagaagatagtccatagttttagattaaacaagaagatgttcgt 5764

                                                                        
Query: 168  caactaaatagtttcaagtaacaacggtatatttaaactggtcaaaggatagtgttcatt 227
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5763 caactaaatagtttcaagtaacaacggtatatttaaactggtcaaaggatagtgttcatt 5704

                                                                        
Query: 228  tatacttgtttgggatttctggagttggcggaatttcaccgtctaacggatactcaatct 287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5703 tatacttgtttgggatttctggagttggcggaatttcaccgtctaacggatactcaatct 5644

                                                                        
Query: 288  taaatataacatgaccactgcctagtctcaaggcaacttgtccctcttgttgcaattgag 347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5643 taaatataacatgaccactgcctagtctcaaggcaacttgtccctcttgttgcaattgag 5584

                                                                        
Query: 348  ggtcactcaagttgatttgtgacacacctagttcagtatctttgctaaacttgtgatgag 407
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5583 ggtcactcaagttgatttgtgacacacctagttcagtatctttgctaaacttgtgatgag 5524

                                                                        
Query: 408  caactgctccaagaacaatacttgagtcaccagtagccttgaaatcgacaacttcgttga 467
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5523 caactgctccaagaacaatacttgagtcaccagtagccttgaaatcgacaacttcgttga 5464

                                                                        
Query: 468  attggcaaactccattttcatcagccttacgttcatgagttctatgtagatgtctaattc 527
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5463 attggcaaactccattttcatcagccttacgttcatgagttctatgtagatgtctaattc 5404

                                                                        
Query: 528  tcccaccttgtgccaatgagactcttacttggacagctttgcctaagttttcagcgccaa 587
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5403 tcccaccttgtgccaatgagactcttacttggacagctttgcctaagttttcagcgccaa 5344

                                                                        
Query: 588  taatggttgctttacccttgtgtgaaccaggaattgtactacgcgagaaattactagcag 647
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5343 taatggttgctttacccttgtgtgaaccaggaattgtactacgcgagaaattactagcag 5284

                                                                        
Query: 648  cagacaaactcctcttatgaattgcaccatgtggatcttggatactggaatcccccttcg 707
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5283 cagacaaactcctcttatgaattgcaccatgtggatcttggatactggaatcccccttcg 5224

                                                                        
Query: 708  cagattaccgta-gtgccgtttgagctcgaacagaagcgtacgaagtgttgggaacagat 766
            |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5223 caga-taccgtaggtgccgtttgagctcgaacagaagcgtacgaagtgttgggaacagat 5165

                                                                        
Query: 767  gggtcgaatccaaaattcgacacggaagatgagctggacgtttttccgtcattagagtcc 826
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5164 gggtcgaatccaaaattcgacacggaagatgagctggacgtttttccgtcattagagtcc 5105

                                                                        
Query: 827  ctgctttcttcgncatttttagatctctta-caccaaatcctttt-atagacggctaccc 884
            ||||||||| || ||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 5104 ctgctttctccgccatttttagatctcttaccaccaaatccttttaatagacggctaccc 5045

                                                                        
Query: 885  ttagataa-ccccctgtcatagcggcaacaccagcaccagtta-cccggcaccgacttgg 942
            |||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct: 5044 ttagataacccccctgtcatagcgccaacaccagcaccagttaccccggcaccgacttgg 4985

                   
Query: 943  gcgacac 949
            |||||||
Sbjct: 4984 gcgacac 4978


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5066
Number of Sequences: 1807
Number of extensions: 5066
Number of successful extensions: 28
Number of sequences better than 1.0e-20: 1
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)