BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZH05RM1.SCF screened BAC_end
(981 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1697 1645 0.0
>3x_Contig1697
Length = 16220
Score = 1645 bits (830), Expect = 0.0
Identities = 902/917 (98%), Gaps = 7/917 (0%)
Strand = Plus / Plus
Query: 45 cttttaatgggaattaaaaaaactccaaacgaaaacaaatagtagcgagcaacaaagaga 104
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 2517 cttttaatgggaattaaaaaaacaccaaacgaaaacaaatagtagcgagcaacaaagaga 2576
Query: 105 cagatagtacttggtttctaccttgtttatgaggctggccaaaagataagatactattaa 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2577 cagatagtacttggtttctaccttgtttatgaggctggccaaaagataagatactattaa 2636
Query: 165 gatggggaatgtaaactgaactacaaaagacaaatactaaaaactaaaatatataatatc 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2637 gatggggaatgtaaactgaactacaaaagacaaatactaaaaactaaaatatataatatc 2696
Query: 225 acagtaagtagtatgtaacaaagtaatgagacagggaatagtgtaatgtattgatgctta 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2697 acagtaagtagtatgtaacaaagtaatgagacagggaatagtgtaatgtattgatgctta 2756
Query: 285 tatttcaaaattcaaatccaaatccaaacacaaatcccaagacccaactcccaaatccta 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2757 tatttcaaaattcaaatccaaatccaaacacaaatcccaagacccaactcccaaatccta 2816
Query: 345 atctcttagccaagtttctatttctgtttcctgtttcctattttccaacttcatcttctt 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2817 atctcttagccaagtttctatttctgtttcctgtttcctattttccaacttcatcttctt 2876
Query: 405 atccatgacaagaaacagaaacctttccaataatttttgccagtttcttttgttccgacg 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2877 atccatgacaagaaacagaaacctttccaataatttttgccagtttcttttgttccgacg 2936
Query: 465 acatactaatgctgtgtgcaatgtggtaacagggaaattgtaggcaatggggaaaaaaac 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2937 acatactaatgctgtgtgcaatgtggtaacagggaaattgtaggcaatggggaaaaaaac 2996
Query: 525 aaaagaaaaaaaaaatgatgaaaagcaggctgagccatgtgtctaaaaacgggaagcaat 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2997 aaaagaaaaaaaaaatgatgaaaagcaggctgagccatgtgtctaaaaacgggaagcaat 3056
Query: 585 gtggtattgggacatctgagcagaagtgcagcacatgtaccaccacaccgtgactgtcaa 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3057 gtggtattgggacatctgagcagaagtgcagcacatgtaccaccacaccgtgactgtcaa 3116
Query: 645 caaagaaaccacgacctgtgtatgtatgttcgtggtttttgttttcattatccaataaat 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3117 caaagaaaccacgacctgtgtatgtatgttcgtggtttttgttttcattatccaataaat 3176
Query: 705 acgtattacggaggacggaggggggccggagaaggcacggcattgcagggccaaggcaag 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3177 acgtattacggaggacggaggggggccggagaaggcacggcattgcagggccaaggcaag 3236
Query: 765 tctcaactctggcttttagctctctgtgatcttaactcaggtaattaaccnagaggg-ag 823
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 3237 tctcaactctggcttttagctctctgtgatcttaactcaggtaattaacc-agagggaag 3295
Query: 824 agtttgaatagagatgaaaaaagtggccaacttttgaaagtaaaag-aaacagggtccac 882
||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||
Sbjct: 3296 agtttgaatagagatgaaaaaggtggccaacttttg-aagtaaaagaaaacagggtccac 3354
Query: 883 aatgggagaatatttcctggaatg-cttcatgggggttatacatnctacatttttttttc 941
| ||||||| ||| |||| ||||| |||||||||| |||||||| |||||||||||| ||
Sbjct: 3355 agtgggagattatctcct-gaatgccttcatggggtttatacatcctacatttttttctc 3413
Query: 942 aac-tacatgatagata 957
||| |||||||||||||
Sbjct: 3414 aacatacatgatagata 3430
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,289
Number of Sequences: 1807
Number of extensions: 11289
Number of successful extensions: 217
Number of sequences better than 1.0e-20: 1
length of query: 981
length of database: 10,358,551
effective HSP length: 16
effective length of query: 965
effective length of database: 10,329,639
effective search space: 9968101635
effective search space used: 9968101635
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)