BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZH06FM1.SCF screened BAC_end
(967 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1730 1477 0.0
>3x_Contig1730
Length = 17223
Score = 1477 bits (745), Expect = 0.0
Identities = 852/876 (97%), Gaps = 10/876 (1%)
Strand = Plus / Minus
Query: 86 cttaagatggctgatacaactactagattctgcatctacggtaatgtgtgacccgtcagt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13907 cttaagatggctgatacaactactagattctgcatctacggtaatgtgtgacccgtcagt 13848
Query: 146 atgaatagtgacagacccatcttcaatcgtgatcagggccaatgactggacagaaccaaa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13847 atgaatagtgacagacccatcttcaatcgtgatcagggccaatgactggacagaaccaaa 13788
Query: 206 ttgtaacatttttttcgcgtctagattttcctcaaattcacaattaagatcgatgattat 265
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13787 ttgtaacatcttcaacgcgtctagattttcctcaaattcacaattaagatcgatgattat 13728
Query: 266 ggcgaacttggaatgcgtaggcacagcagcagttcctaaatgttttaggtatgacgatga 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13727 ggcgaacttggaatgcgtaggcacagcagcagttcctaaatgttttaggtatgacgatga 13668
Query: 326 taatggaatattccctagttcattataagcattacaaaaagaacaaaaccacccagctcg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13667 taatggaatattccctagttcattataagcattacaaaaagaacaaaaccacccagctcg 13608
Query: 386 tgaatctcttgaacataaaaaattcgcaaaccctccacagattttacaattggtataatt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13607 tgaatctcttgaacataaaaaattcgcaaaccctccacagattttacaattggtataatt 13548
Query: 446 ctcactgcttgctaggcttgaattcccgtcaattgtcaagtccggctcacaaatggcact 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13547 ctcactgcttgctaggcttgaattcccgtcaattgtcaagtccggctcacaaatggcact 13488
Query: 506 tatcgatccacggttatcatctccacaatcgagaactctagctaagcaatctgtccggga 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13487 tatcgatccacggttatcatctccacaatcgagaactctagctaagcaatctgtccggga 13428
Query: 566 cgtaggaacggctccataattcaattcaaacatcaagttctagatggtggaatatgcgga 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13427 cgtaggaacggctccataattcaattcaaacatcaagttctagatggtggaatatgcgga 13368
Query: 626 cacttgacggatgaaggtgataactctactgtgcgtgtctgctgataggaaaacctttct 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13367 cacttgacggatgaaggtgataactctactgtgcgtgtctgctgataggaaaacctttct 13308
Query: 686 ctggagatgagatccaagataagatagagcaggtagcggagaattcaatatcatcacaag 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13307 ctggagatgagatccaagataagatagagcaggtagcggagaattcaatatcatcacaag 13248
Query: 746 atccgggtaatgtatatattaggttcattctcttt-attttcagtgtttctacgaagttg 804
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 13247 atccgggtaatgtatatattaggttcattctctttaattttcagtgtttctacgaagttg 13188
Query: 805 tttatggcatctg-aaaagctgtaaaa-tttgaaaaaga-aaagctgatag-tagtttag 860
||||||||||||| |||||||| |||| ||||||||||| ||||||||||| ||||||||
Sbjct: 13187 tttatggcatctgaaaaagctgaaaaattttgaaaaagagaaagctgatagttagtttag 13128
Query: 861 cttgattac--gagagatca-cacatttgtgcacacattgtattttattaacttcttaaa 917
||||||||| |||||||| |||||||||||||||||||||||| | ||||| | | |
Sbjct: 13127 cttgattacagaagagatcaccacatttgtgcacacattgtatttaaataactcttcaga 13068
Query: 918 aattcatcaatagcacttggagaatagaagagaact 953
| | |||||||||||| ||||| |||||||||||||
Sbjct: 13067 agtccatcaatagcac-tggag-atagaagagaact 13034
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7182
Number of Sequences: 1807
Number of extensions: 7182
Number of successful extensions: 71
Number of sequences better than 1.0e-20: 1
length of query: 967
length of database: 10,358,551
effective HSP length: 16
effective length of query: 951
effective length of database: 10,329,639
effective search space: 9823486689
effective search space used: 9823486689
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)