BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZH06RM1.SCF screened BAC_end
(963 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig785 1150 0.0
3x_Contig264 272 1e-72
>3x_Contig785
Length = 2769
Score = 1150 bits (580), Expect = 0.0
Identities = 657/677 (97%), Gaps = 5/677 (0%)
Strand = Plus / Plus
Query: 287 atgtacgtgacagatatatgctttgttcttgtgttattcggtgtcatgaaatattatcat 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgtacgtgacagatatatgctttgttcttgtgttattcggtgtcatgaaatattatcat 60
Query: 347 tcgtcattccctatttcagttccaatagaaccaccgattgcagggattcaatagaaaagt 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcgtcattccctatttcagttccaatagaaccaccgattgcagggattcaatagaaaagt 120
Query: 407 atcttttggttgtgaaaatggaaactcgttcattaacgatcaaaactatataattctaat 466
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atcttttggttgtgaaacccgaaactcgttcattaacgatcaaaactatataattctaat 180
Query: 467 tatcaattgtttattcccttaaacatgaatatgtgttgtacttccacttaaaagaacgct 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tatcaattgtttattcccttaaacatgaatatgtgttgtacttccacttaaaagaacgct 240
Query: 527 ttagtatgttttcatttcattcatagaactatttaaagcctacttatatcatacacaaaa 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttagtatgttttcatttcattcatagaactatttaaagcctacttatatcatacacaaaa 300
Query: 587 gagcaaagcactacaccaagacgaaatgcttattttggtggttggtaaagggcacacaac 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gagcaaagcactacaccaagacgaaatgcttattttggtggttggtaaagggcacacaac 360
Query: 647 ttgttaccatcgacgtcacgaacgtaagacaagaacaagcccgatggacggtaaccaggt 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttgttaccatcgacgtcacgaacgtaagacaagaacaagcccgatggacggtaaccaggt 420
Query: 707 gcatcctcgatagaagtaccgccgttagcaactgcaacatcgtggaactttgttacttct 766
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 421 gcatcctcgatagaagtaccgccgttagcaactgcaacatcgtggaactttgtaacttct 480
Query: 767 tcttcaga-tcacatttgaaaccaatggtataaccgttacctgnagtggcagcttggtca 825
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 481 tcttcagagtcacatttgaaaccaatggtataaccgttacctggagtggcagcttggtca 540
Query: 826 ttatttggttgagtgactaaaagg-aaaagtcgnctttagcatagaac-accttttgtgt 883
||| |||||||||||||||||||| |||||||| |||||||||||||| |||| ||||||
Sbjct: 541 ttaattggttgagtgactaaaaggaaaaagtcgcctttagcatagaacaacctcttgtgt 600
Query: 884 ccatttncattactgtcattctgtgtcgggagc-acaccaatgacgccaagaacggcttt 942
|||||| ||| |||||||| ||||| ||||||| ||||||||||||||||||||||| |
Sbjct: 601 ccatttccatcactgtcatcctgtg-cgggagcaacaccaatgacgccaagaacggcatc 659
Query: 943 ttaaaattttcttgctt 959
|| |||||||||||||
Sbjct: 660 gtagaattttcttgctt 676
>3x_Contig264
Length = 1241
Score = 272 bits (137), Expect = 1e-72
Identities = 140/141 (99%)
Strand = Plus / Minus
Query: 45 acttgttatcccaaatattggaaagatcgaacttcttctccatctttaccggactagaaa 104
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 acttgttatcccaaatagtggaaagatcgaacttcttctccatctttaccggactagaaa 82
Query: 105 tagtattcatctctatctactatcaaatgttgaagaaacttcaaagagataacaatgtta 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 tagtattcatctctatctactatcaaatgttgaagaaacttcaaagagataacaatgtta 22
Query: 165 cggccacccaaaacgcaggag 185
|||||||||||||||||||||
Sbjct: 21 cggccacccaaaacgcaggag 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7854
Number of Sequences: 1807
Number of extensions: 7854
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 2
length of query: 963
length of database: 10,358,551
effective HSP length: 16
effective length of query: 947
effective length of database: 10,329,639
effective search space: 9782168133
effective search space used: 9782168133
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)